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LOC18045188 transcription factor BIM2 [ Citrus x clementina ]

Gene ID: 18045188, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18045188
Gene description
transcription factor BIM2
Locus tag
CICLE_v10032020mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18045188 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262274.1 (20367213..20370398)

NW_006262274.1Genomic Context describing neighboring genes Neighboring gene DNA-3-methyladenine glycosylase Neighboring gene phosphatidylinositol 4-kinase gamma 5 Neighboring gene dipeptidyl aminopeptidase BI Neighboring gene uncharacterized LOC18045190

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262274 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor BIM2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262274.1 Reference Citrus_clementina_v1.0

    Range
    20367213..20370398
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006437784.2 → XP_006437847.1  transcription factor BIM2 isoform X2

    See identical proteins and their annotated locations for XP_006437847.1

    UniProtKB/TrEMBL
    V4THH5
    Conserved Domains (1) summary
    pfam00010
    Location:46 → 95
    HLH; Helix-loop-helix DNA-binding domain

  2. XM_006437783.2 → XP_006437846.1  transcription factor BIM2 isoform X3

    See identical proteins and their annotated locations for XP_006437846.1

    UniProtKB/TrEMBL
    V4TML6, V4VF23
    Conserved Domains (1) summary
    pfam00010
    Location:46 → 95
    HLH; Helix-loop-helix DNA-binding domain

  3. XM_006437785.2 → XP_006437848.1  transcription factor BIM2 isoform X1

    See identical proteins and their annotated locations for XP_006437848.1

    UniProtKB/TrEMBL
    V4STA9
    Conserved Domains (1) summary
    pfam00010
    Location:54 → 103
    HLH; Helix-loop-helix DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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