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LOC18018304 transcription factor BIM1 [ Eutrema salsugineum ]

Gene ID: 18018304, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18018304
Gene description
transcription factor BIM1
Locus tag
EUTSA_v10013181mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18018304 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256829.1 (2612905..2617067, complement)

NW_006256829.1Genomic Context describing neighboring genes Neighboring gene uncharacterized ATP-dependent helicase YprA Neighboring gene protein MICROTUBULE BINDING PROTEIN 2C Neighboring gene E3 ubiquitin-protein ligase CIP8 Neighboring gene FK506-binding protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256829 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor BIM1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256829.1 Reference Eutsalg1_0

    Range
    2612905..2617067 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024156231.1 → XP_024011999.1  transcription factor BIM1 isoform X2

    Conserved Domains (1) summary
    pfam00010
    Location:282 → 331
    HLH; Helix-loop-helix DNA-binding domain

  2. XM_006399237.2 → XP_006399300.1  transcription factor BIM1 isoform X1

    See identical proteins and their annotated locations for XP_006399300.1

    UniProtKB/TrEMBL
    V4LLR0
    Conserved Domains (1) summary
    pfam00010
    Location:282 → 331
    HLH; Helix-loop-helix DNA-binding domain

  3. XM_024156232.1 → XP_024012000.1  transcription factor BIM1 isoform X3

    UniProtKB/TrEMBL
    V4LEB1
    Conserved Domains (1) summary
    pfam00010
    Location:165 → 214
    HLH; Helix-loop-helix DNA-binding domain

  4. XM_006399236.2 → XP_006399299.1  transcription factor BIM1 isoform X3

    See identical proteins and their annotated locations for XP_006399299.1

    UniProtKB/TrEMBL
    V4LEB1
    Conserved Domains (1) summary
    pfam00010
    Location:165 → 214
    HLH; Helix-loop-helix DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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