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LOC101263596 transcription factor BIM1 [ Solanum lycopersicum (tomato) ]

Gene ID: 101263596, updated on 1-Nov-2024

Summary

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Gene symbol
LOC101263596
Gene description
transcription factor BIM1
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101263596 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 3 NC_090802.1 (61402889..61409442)
103 previous assembly SL3.0 (GCF_000188115.4) 3 NC_015440.3 (66108769..66115308)

Chromosome 3 - NC_090802.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC138347302 Neighboring gene UDP-glycosyltransferase 89B2 Neighboring gene rhamnogalacturonan I rhamnosyltransferase 1-like Neighboring gene uncharacterized LOC101263300

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor BIM1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090802.1 Reference SLM_r2.1 Primary Assembly

    Range
    61402889..61409442
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010320586.4 → XP_010318888.1  transcription factor BIM1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q7GGC3
    Conserved Domains (1) summary
    pfam00010
    Location:259 → 308
    HLH; Helix-loop-helix DNA-binding domain

  2. XM_004236032.5 → XP_004236080.1  transcription factor BIM1 isoform X1

    Conserved Domains (1) summary
    pfam00010
    Location:260 → 309
    HLH; Helix-loop-helix DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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