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LOC100843821 transcription factor MUTE [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100843821, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100843821
Gene description
transcription factor MUTE
Locus tag
BRADI_1g18400v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100843821 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (14769016..14770251, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (14769083..14770202, complement)

Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene tubby-like F-box protein 11 Neighboring gene inactive beta-amylase 9 Neighboring gene zinc finger protein CONSTANS-LIKE 13 Neighboring gene uncharacterized LOC100841504

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mobile MUTE specifies subsidiary cells to build physiologically improved grass stomata. Raissig MT, et al. Science, 2017 Mar 17. PMID 28302860
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in guard cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in stomatal complex development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor MUTE

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    14769016..14770251 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014896765.2 → XP_014752251.1  transcription factor MUTE

    UniProtKB/TrEMBL
    I1GRC8
    Conserved Domains (1) summary
    pfam00010
    Location:1 → 50
    HLH; Helix-loop-helix DNA-binding domain
Nucleotide Protein Strain
Heading Accession and Version

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