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LOC100826888 transcription factor BIM2 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100826888, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100826888
Gene description
transcription factor BIM2
Locus tag
BRADI_3g38970v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100826888 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (41158779..41164715)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (41464828..41470757)

Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene DNA-3-methyladenine glycosylase Neighboring gene phosphatidylinositol 4-kinase gamma 6 Neighboring gene dof zinc finger protein MNB1A Neighboring gene cleavage and polyadenylation specificity factor subunit 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor BIM2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    41158779..41164715
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003574634.4 → XP_003574682.1  transcription factor BIM2 isoform X1

    UniProtKB/TrEMBL
    A0A0Q3IDZ8, I1I845
    Conserved Domains (1) summary
    pfam00010
    Location:203 → 252
    HLH; Helix-loop-helix DNA-binding domain

  2. XM_010236945.3 → XP_010235247.1  transcription factor BIM2 isoform X2

    UniProtKB/TrEMBL
    A0A0Q3FHN9, A0A0Q3M2K2
    Conserved Domains (1) summary
    pfam00010
    Location:136 → 185
    HLH; Helix-loop-helix DNA-binding domain
Nucleotide Protein Strain
Heading Accession and Version

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