GEO DataSets

(Submitter supplied) The prophage and RF DNA of SW1 were removed from WP3 to construct the phage-free strain. The two strains were cultured at 4°C and the transcriptional profiles were compared.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

2 Samples

Download data: LSR

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

12 Samples

Download data

(Submitter supplied) The hns gene was deleted from WP3 genome to construct the WP3Δhns strain. The two strains were cultured at 20°C and the transcriptional profiles were compared.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

6 Samples

Download data: LSR

(Submitter supplied) The hns gene was deleted from WP3 genome to construct the WP3Δhns strain. The two strains were cultured at 4°C and the transcriptional profiles were compared.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

6 Samples

Download data: LSR

(Submitter supplied) The lexA gene was deleted from WP3 genome to construct the WP3ΔlexA strain. The two strains were cultured at 20°C and the transcriptional profiles were compared.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

6 Samples

Download data: LSR

(Submitter supplied) The lexA gene was deleted from WP3 genome to construct the WP3ΔlexA strain. The two strains were cultured at 4°C and the transcriptional profiles were compared.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

6 Samples

Download data: LSR

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

18 Samples

Download data

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

12 Samples

Download data: GPR

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

18 Samples

Download data

(Submitter supplied) The WP3 strains were cultured at 4°C and 25°C, respectively. The transcriptional profiles at these two different temperatures were compared.

Organism:

Shewanella piezotolerans WP3

Type:

Expression profiling by array

Platform:

GPL16568

6 Samples

Download data: GAL, GPR

(Submitter supplied) This study presents a global transcriptional analysis of the cold shock response of Shewanella oneidensis MR-1 after a temperature downshift from 30 to 8 or 15oC based on time-series microarray experiments. More than 700 genes were found to be significantly affected (p < 0.05) upon cold shock challenge, especially at 8oC. The temporal gene expression patterns of the classical cold-shock genes varied and only some of them, most notably so1648 and so2787, were differentially regulated in response to temperature downshift. more...

Organism:

Shewanella oneidensis MR-1

Type:

Expression profiling by array

Platform:

GPL3253

60 Samples

Download data

(Submitter supplied) In this work we analyzed changes in gene espression in Shewanella baltica upon cold stress. In order to imitate natural environment, we cultured bacteria in the Instant Ocean medium in a chemostat. Samples were collected after 90 and 180 minutes of cold stress and analyzed by RNA sequencing. The transcriptomic response could be characterized as global downregulation of gene expression (613 genes downregulated) and we found only 242 genes which were upregulated. more...

Organism:

Shewanella baltica

Type:

Expression profiling by high throughput sequencing

Platform:

GPL28560

5 Samples

Download data: TXT, WIG

(Submitter supplied) Vibrio cholerae is highly motile by the action of a single polar flagellum. The loss of motility reduces the infectivity of V. cholerae, demonstrating that motility is an important virulence factor. FlrC is the sigma-54-dependent positive regulator of flagellar genes. Recently, the genes VC2206 (flgP) and VC2207 (flgO) were identified as being regulated by FlrC by microarray analysis of an flrC mutant. more...

Organism:

Vibrio cholerae

Type:

Expression profiling by array

Platform:

GPL8865

2 Samples

Download data: DAT