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Structure

Three dimensional structures

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Select item 2526981.

Molecular Structure Image for 8VPI

CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Containing Quinoline-based SGI-1027 Analog 462[TRANSFERASE, DNA BINDING PROTEIN/DNA]

Taxonomy:: Clostridioides difficile

Proteins:: 1
Nucleic acids:: (DNA)
Chemicals:: 2
modified:: 2024-10-07

MMDB ID:: 252698
PDB ID:: 8VPI

View in iCn3D PubMed Proteins PubChem Compound

Select item 2526972.

Molecular Structure Image for 8VPH

CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Containing Quinoline-based SGI-1027 Analog 455 and Inhibitor MC4741[Transferase, DNA Binding Protein/DNA]

Taxonomy:: Clostridioides difficile

Proteins:: 1
Nucleic acids:: (DNA)
Chemicals:: 2
modified:: 2024-10-07

MMDB ID:: 252697
PDB ID:: 8VPH

View in iCn3D PubMed Proteins PubChem Compound

Select item 2526963.

Molecular Structure Image for 8VPG

CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Containing Quinoline-based SGI-1027 Analog 455[TRANSFERASE, DNA BINDING PROTEIN/DNA]

Taxonomy:: Clostridioides difficile

Proteins:: 1
Nucleic acids:: (DNA)
Chemicals:: 1
modified:: 2024-10-07

MMDB ID:: 252696
PDB ID:: 8VPG

View in iCn3D PubMed Proteins PubChem Compound

Select item 2515764.

Molecular Structure Image for 8Y9C

De novo design mini-binder in complex with TcdB4[TOXIN/DE NOVO PROTEIN]

Taxonomy:: Clostridioides difficile, synthetic construct

Proteins:: 2
Chemicals:: 1
modified:: 2024-10-22

MMDB ID:: 251576
PDB ID:: 8Y9C

View in iCn3D PubMed Proteins PubChem Compound

Select item 2515755.

Molecular Structure Image for 8Y9B

TcdB1 in complex with mini-binder[TOXIN/DE NOVO PROTEIN]

Taxonomy:: Clostridioides difficile, synthetic construct

Proteins:: 2
Chemicals:: 1
modified:: 2024-10-22

MMDB ID:: 251575
PDB ID:: 8Y9B

View in iCn3D PubMed Proteins PubChem Compound

Select item 2515256.

Molecular Structure Image for 8V43

CryoEM Structure of Diffocin - postcontracted - Baseplate - final state[VIRUS LIKE PARTICLE]

Taxonomy:: Clostridioides difficile

Proteins:: 42
modified:: 2024-08-28

MMDB ID:: 251525
PDB ID:: 8V43

View in iCn3D PubMed Proteins

Select item 2515247.

Molecular Structure Image for 8V41

CryoEM Structure of Diffocin - postcontracted - Baseplate - transitional state[VIRUS LIKE PARTICLE]

Taxonomy:: Clostridioides difficile

Proteins:: 42
modified:: 2024-08-28

MMDB ID:: 251524
PDB ID:: 8V41

View in iCn3D PubMed Proteins

Select item 2515238.

Molecular Structure Image for 8V40

CryoEM Structure of Diffocin - postcontracted - Collar - final state[VIRUS LIKE PARTICLE]

Taxonomy:: Clostridioides difficile

Proteins:: 42
modified:: 2024-08-28

MMDB ID:: 251523
PDB ID:: 8V40

View in iCn3D PubMed Proteins

Select item 2515229.

Molecular Structure Image for 8V3Z

CryoEM Structure of Diffocin - postcontracted - Collar - transitional state[VIRUS LIKE PARTICLE]

Taxonomy:: Clostridioides difficile

Proteins:: 42
modified:: 2024-08-28

MMDB ID:: 251522
PDB ID:: 8V3Z

View in iCn3D PubMed Proteins

Select item 25152110.

Molecular Structure Image for 8V3Y

CryoEM Structure of Diffocin - postcontracted - Trunk[VIRUS LIKE PARTICLE]

Taxonomy:: Clostridioides difficile

Proteins:: 30
modified:: 2024-08-28

MMDB ID:: 251521
PDB ID:: 8V3Y

View in iCn3D PubMed Proteins

Select item 25152011.

Molecular Structure Image for 8V3X

CryoEM Structure of Diffocin - precontracted - Trunk[VIRUS LIKE PARTICLE]

Taxonomy:: Clostridioides difficile

Proteins:: 42
modified:: 2024-08-28

MMDB ID:: 251520
PDB ID:: 8V3X

View in iCn3D PubMed Proteins

Select item 25151912.

Molecular Structure Image for 8V3W

CryoEM Structure of Diffocin - precontracted - Baseplate - focused refinement on triplex region[VIRUS LIKE PARTICLE]

Taxonomy:: Clostridioides difficile

Proteins:: 63
modified:: 2024-08-28

MMDB ID:: 251519
PDB ID:: 8V3W

View in iCn3D PubMed Proteins

Select item 25151813.

Molecular Structure Image for 8V3T

CryoEM Structure of Diffocin - precontracted - Collar[VIRUS LIKE PARTICLE]

Taxonomy:: Clostridioides difficile

Proteins:: 42
modified:: 2024-08-28

MMDB ID:: 251518
PDB ID:: 8V3T

View in iCn3D PubMed Proteins

Select item 24431314.

Molecular Structure Image for 8QEO

cryo-EM structure complex of Frizzled-7 and Clostridioides difficile toxin B[TOXIN]

Taxonomy:: Clostridioides difficile, Homo sapiens

Proteins:: 2
Chemicals:: 1
modified:: 2024-03-25

MMDB ID:: 244313
PDB ID:: 8QEO

View in iCn3D Similar Structures PubMed Proteins PubChem Compound

Select item 24431215.

Molecular Structure Image for 8QEN

cryo-EM structure of apo Clostridioides difficile toxin B[TOXIN]

Taxonomy:: Clostridioides difficile

Proteins:: 1
Chemicals:: 1
modified:: 2024-03-25

MMDB ID:: 244312
PDB ID:: 8QEN

View in iCn3D Similar Structures PubMed Proteins PubChem Compound

Select item 23009616.

Molecular Structure Image for 8FS2

CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor 11b (YD907)[TRANSFERASE/DNA/INHIBITOR]

Taxonomy:: Clostridioides difficile

Proteins:: 1
Nucleic acids:: (DNA)
Chemicals:: 5
modified:: 2024-05-27

MMDB ID:: 230096
PDB ID:: 8FS2

View in iCn3D Similar Structures PubMed Proteins Conserved Domains PubChem Compound

Select item 23009517.

Molecular Structure Image for 8FS1

CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor 11a (YD905)[TRANSFERASE/DNA/INHIBITOR]

Taxonomy:: Clostridioides difficile

Proteins:: 1
Nucleic acids:: (DNA)
Chemicals:: 5
modified:: 2024-05-27

MMDB ID:: 230095
PDB ID:: 8FS1

View in iCn3D Similar Structures PubMed Proteins Conserved Domains PubChem Compound

Select item 22870718.

Molecular Structure Image for 8DCN

Crystal structure of Clostridioides difficile binary toxin CDTb D4 fragment in complex with BINTOXB/9 Fab[TOXIN/IMMUNE SYSTEM]

Taxonomy:: Mus musculus, Clostridioides difficile

Proteins:: 3
modified:: 2023-10-27

MMDB ID:: 228707
PDB ID:: 8DCN

View in iCn3D Similar Structures PubMed Proteins

Select item 22870619.

Molecular Structure Image for 8DCM

Crystal structure of Clostridioides difficile binary toxin proCDTb lacking D4 in complex with BINTOXB/22 Fab[TOXIN/IMMUNE SYSTEM]

Taxonomy:: Mus musculus, Clostridioides difficile

Proteins:: 3
Chemicals:: 4
modified:: 2024-10-29

MMDB ID:: 228706
PDB ID:: 8DCM

View in iCn3D Similar Structures PubMed Proteins PubChem Compound

Select item 22838720.

Molecular Structure Image for 7Z9P

The novel DNA binding mechanism of ridinilazole, a precision Clostridiodes difficile antibiotic[DNA]

Taxonomy:: Clostridioides difficile

Nucleic acids:: (DNA)
Chemicals:: 4
modified:: 2024-02-12

MMDB ID:: 228387
PDB ID:: 7Z9P

View in iCn3D PubMed PubChem Compound

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Protein Domain Families

Families (114)
Structures with functionally specific protein families
Superfamilies (121)
Structures with evolutionary related protein superfamilies

Complexes

Protein-Protein (84)
Structures containing multiple proteins
Protein-DNA (27)
Structures containing proteins and DNA
Protein-Chemical (119)
Structures containing proteins and chemicals

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PubMed (156)
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PMC (34)
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txid1496[Organism:noexp] (174)
Structure
txid1496[Organism:exp] (5)
Conserved Domains
Centaurea forardi (41)
BioProject
Staphylococcus succinus strain Z2Ba-23 16S ribosomal RNA gene, partial sequence
Staphylococcus succinus strain Z2Ba-23 16S ribosomal RNA gene, partial sequence
gi|326582762|gb|HQ238920.1|

Nucleotide
Bacillus thuringiensis strain G7Ba-59 16S ribosomal RNA gene, partial sequence
Bacillus thuringiensis strain G7Ba-59 16S ribosomal RNA gene, partial sequence
gi|326582769|gb|HQ238927.1|

Nucleotide

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