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ERX682494: Illumina MiSeq paired end sequencing
1 ILLUMINA (Illumina MiSeq) run: 811,215 spots, 392.6M bases, 268.1Mb downloads

Design: Whole genome sequencing of culture collection isolates.
Submitted by: CGS-GL
Study: Sequencing assembly of Klebsiella variicola from defined culture collection
show Abstracthide Abstract
To gain insights into the interrelationships between childhood undernutrition, the gut microbiota, and gut mucosal immune/barrier function, we purified bacterial strains targeted by IgA from the fecal microbiota of two cohorts of Malawian infants/children. IgA responses to several bacterial taxa, including Enterobacteriaceae, correlated with anthropometric measurements of nutritional status in longitudinal studies. The relationship between IgA responses and growth was further explained by enteropathogen burden. Gnotobiotic mouse recipients of an IgA+-bacterial consortium purified from undernourished microbiota exhibited a diet-dependent enteropathy characterized by rapid disruption of the small intestinal and colonic epithelial barrier, weight loss and sepsis that could be prevented by administering two IgA-targeted bacterial species from a healthy microbiota. Dissection of a culture collection of 11 IgA-targeted strains from an undernourished donor, sufficient to transmit these phenotypes, disclosed that Enterobacteriaceae interacted with other consortium members to produce enteropathy. These findings indicate that bacterial targets of IgA responses have etiologic, diagnostic, and therapeutic implications for childhood undernutrition.
Sample: 1f2B
SAMEA3217956 • ERS644956 • All experiments • All runs
Library:
Name: 1f2B
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: size fractionation
Layout: PAIRED
Construction protocol: Libraries prepared by sonication of genomic DNA followed by adaptor ligation, size selection then PCR amplification.
Spot descriptor:
forward  reverse

Runs: 1 run, 811,215 spots, 392.6M bases, 268.1Mb
Run# of Spots# of BasesSizePublished
ERR738811811,215392.6M268.1Mb2015-02-25

ID:
1278874

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