Mapped reads for uncultivated Chloroflexi bacterium UBA10416 genome r... - SRA

SRX3572806: Mapped reads for uncultivated Chloroflexi bacterium UBA10416 genome recovered from SRX474087
1 ILLUMINA (Illumina HiSeq 2000) run: 88,758 spots, 16M bases, 7.9Mb downloads

Design: Reads from SRX474087 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA10416 genome.

Submitted by: University of Queensland

Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.

PRJNA417962 • SRP130174 • All experiments • All runs

show Abstracthide Abstract

Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.

Sample: Uncultivated Chloroflexi bacterium UBA10416 genome recovered from SRX474087

SAMN08018102 • SRS2843777 • All experiments • All runs

Organism: Chloroflexota bacterium

Library:

Name: UBA10416_library

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: METAGENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 88,758 spots, 16M bases, 7.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR6483168	88,758	16M	7.9Mb	2018-03-05

ID:: 4958308

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity