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SRX3572138: Mapped reads for uncultivated Pediococcus bacterium UBA10701 genome recovered from ERX644121
1 ILLUMINA (Illumina HiSeq 2000) run: 3.1M spots, 536M bases, 240.5Mb downloads

Design: Reads from ERX644121 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA10701 genome.
Submitted by: University of Queensland
Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.
PRJNA417962 • SRP130174 • All experiments • All runs
show Abstracthide Abstract
Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.
Sample: Uncultivated Pediococcus bacterium UBA10701 genome recovered from ERX644121
SAMN08019043 • SRS2843108 • All experiments • All runs
Organism: Pediococcus sp.
Library:
Name: UBA10701_library
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 3.1M spots, 536M bases, 240.5Mb
Run# of Spots# of BasesSizePublished
SRR64823263,086,476536M240.5Mb2018-03-05

ID:
4957640

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