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SRX2779513: Ffu_mRNA
1 ILLUMINA (Illumina HiSeq 2500) run: 21.4M spots, 5.4G bases, 1.9Gb downloads

Design: Whole plants were collected and total RNA was extracted from ground plant tissues using a modified CTAB method. The mRNA library was constructed using NEBNext¨ mRNA Library Prep Reagent Set for illumina (NEB, E6100L), and pooled and sequenced (single end, 125bp).
Submitted by: UC Riverside
Study: Transcriptome of 1 hornwort, 4 lycophytes and 21 ferns
show Abstracthide Abstract
Pathways underlying miRNA biogenesis, degradation, and activity were established early in land plant evolution, but the 24-nt siRNA pathway that guides DNA methylation was incomplete in early land plants, especially lycophytes. We show that the functional diversification of key gene families such as DICER-LIKE and ARGONAUTE (AGO) as observed in angiosperms occurred early in land plants followed by parallel expansion of the AGO family in ferns and angiosperms. We uncovered an unexpected AGO family specific to lycophytes and ferns. Our phylogenetic analyses of miRNAs in lycophytes, bryophytes, ferns, and angiosperms refined the temporal origination of conserved miRNA families in land plants.
Sample: introduced from Shenzhen, Guandong, China and cultivated in greenhouse, temperature controlled at 15~25 ûC
SAMN06856088 • SRS2162762 • All experiments • All runs
Library:
Name: Ffu_mRNA
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 21.4M spots, 5.4G bases, 1.9Gb
Run# of Spots# of BasesSizePublished
SRR549940421,444,7465.4G1.9Gb2017-07-21

ID:
4007518

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