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SRX1278024: GSM1891600: cell line R5 at P19; Drosophila melanogaster; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 22.6M spots, 3.4G bases, 2Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Discovery of progenitor signatures by time series synexpression analysis during Drosophila cell immortalization [RNA-Seq]
show Abstracthide Abstract
To characterize the sequence of events associated with RasV12 immortalization of Drosophila embryonic cells, we generated transcriptional time series during cell line establishment, from primary cultures until passage (P) 19. Overall design: We generated three transcriptional time series from three cell lines (R1, R4 and R5) by sampling the cultures at successive stages, early (P2-4), intermediate (P4-11), and late (P16-19), characterized by different passage times. Time points for the R1 time-series were: P2, P3, P4, P5, P7, P8, P10, P11, P16, P17 and P19; for the R4 time-series: P2, P3, P4, P5, P6, P7, P9, P11, P12, P16, P17 and P19; and for the R5 time-series: P2, P3, P4, P6, P7, P8, P16, P17 and P19
Sample: cell line R5 at P19
SAMN04103705 • SRS1082477 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA isolation using TRIzol reagent.5 micrograms of long RNA species from each sample were depleted from rRNAs using the Ribo-Zero rRNA Removal Kit (Human/Mouse/Rat; Epicentre) RNA libraries were prepared for sequencing starting from 50ng of rRNA-depleted RNAs following the manufacturer's instructions (Script-Seq v2 RNA-Seq; Epicentre)
Experiment attributes:
GEO Accession: GSM1891600
Links:
Runs: 1 run, 22.6M spots, 3.4G bases, 2Gb
Run# of Spots# of BasesSizePublished
SRR249691922,596,3033.4G2Gb2015-09-25

ID:
1827541

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