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SRX9933708: GSM5034341: HIV YTHDC1 PAR-CLIP repeat; Homo sapiens; Human immunodeficiency virus 1; RIP-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 27.7M spots, 1.4G bases, 458.6Mb downloads

Submitted by: NCBI (GEO)
Study: Epitranscriptomic addition of m6A regulates HIV-1 RNA stability and alternative splicing
show Abstracthide Abstract
Several prior reports have demonstrated that the epitranscriptomic addition of m6A to viral transcripts promotes the replication and pathogenicity of a wide range of viruses yet the underlying mechanism(s) causing this positive effect has remained unclear. It is known that m6A function is largely mediated by cellular m6A binding proteins or readers, however, how these m6A reader proteins contribute to the regulation of HIV-1 gene expression has remained controversial. Here, we confirm that m6A indeed enhances HIV-1 gene expression. We demonstrate that this effect is collectively mediated by the cytoplasmic reader YTHDF2, which increases HIV-1 transcript stability, and the nuclear m6A reader YTHDC1, which binds HIV-1 RNA at 7 distinct m6A methylated sites, regulating viral transcript alternative splicing. Overall design: GFP (control) or YTHDC1 PAR-CLIP on HIV-1-infected CD4+ 293T cells.
Sample: HIV YTHDC1 PAR-CLIP repeat
SAMN17530812 • SRS8109120 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2000
Strategy: RIP-Seq
Source: TRANSCRIPTOMIC
Selection: other
Layout: SINGLE
Construction protocol: PAR-CLIP All samples were processed with the Illumina Truseq small RNA-seq library prep kit
Experiment attributes:
GEO Accession: GSM5034341
Links:
Runs: 1 run, 27.7M spots, 1.4G bases, 458.6Mb
Run# of Spots# of BasesSizePublished
SRR1352303227,704,3691.4G458.6Mb2021-06-21

ID:
12994259

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