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SRX9921059: GSM5031884: Sample_ED_3; Xenopus laevis; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 30.9M spots, 3.2G bases, 1.2Gb downloads

Submitted by: NCBI (GEO)
Study: High expression profiling analysis of the early response to spinal cord injury identified a key role for mTORC1 signaling
show Abstracthide Abstract
Xenopus laevis are able to regenerate the spinal cord during larvae stages through the activation of neural stem progenitor cells (NSPC). Here, we use high-resolution expression profiling to characterize the early transcriptome changes induced after spinal cord injury, and identify the signals that trigger NSPC proliferation. The analysis delineates a pathway that starts with a rapid and transitory activation of immediate early genes, followed by migration processes and immune response genes, the pervasive increase of NSPC specific ribosome biogenesis factors, and genes involved in stem cell proliferation. Western blot and immunofluorescence analysis showed that mTORC1 is rapidly and transiently activated after SCI, and its pharmacological inhibition impairs spinal cord regeneration, and proliferation of NSPC of genes involved in the G1/S transition of cell cycle, with a strong effect on PCNA. We propose that the mTOR signaling pathway is a key player in the activation of NPSCs during the early steps of spinal cord regeneration. Overall design: Time-series analysis of the early transcriptional changes deployed in response to spinal cord injury in regenerative stage of Xenopus laevis.
Sample: Sample_ED_3
SAMN17497113 • SRS8097982 • All experiments • All runs
Organism: Xenopus laevis
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Spinal cords from animals at R-stage were dissected in time-series after surgery and immediately stored in RNAlater. Posterioly the purification of total RNA was performed using the RNeasy Mini Kit. RNA libraries were prepared by TruSeq RNA Library Prep Kit v2. Posterioly these were sequenced on the Illumina HiSeq 2000 and HiSeq 4000.
Experiment attributes:
GEO Accession: GSM5031884
Links:
Runs: 1 run, 30.9M spots, 3.2G bases, 1.2Gb
Run# of Spots# of BasesSizePublished
SRR1350959630,922,7733.2G1.2Gb2021-11-11

ID:
12980554

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