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SRX9898266: GSM5026459: VV3; Taeniopygia guttata; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 18.3M spots, 2.8G bases, 1Gb downloads

Submitted by: NCBI (GEO)
Study: A conserved paint box underlies color pattern diversity in Estrildid finches.
show Abstracthide Abstract
Many animals exhibit typical color patterns that have been linked to key adaptive functions, yet the developmental mechanisms establishing these crucial designs remain unclear. Here, we surveyed color distribution in the plumage across a large number of passerine finches. Despite extreme apparent pattern diversity, we identified a small set of conserved color regions whose combinatory association can explain all observed patterns. We found these domains are instructed by signals from embryonic somites and lateral plate mesoderm, and through profiling and comparative analyses, produced a molecular map marking putative color domains in the developing skin. This revealed cryptic pre-patterning common to differently colored species, uncovering a simple molecular landscape underlying extensive color pattern variation. Overall design: identification of molecules spatially restricted to presumptive color domains, three dorsal and four ventral regions of the embryonic skin at hh28, in triplicate
Sample: VV3
SAMN17384374 • SRS8077306 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Skin was dissected out on ice, kept in RNA later and stored at -80°C until RNA extraction was performed. Total RNA was extracted using the Rneasy micro kit (Qiagen) following the manufacturer's protocol. 10 ng of total RNA were amplified and converted to cDNA using SMART-Seq v4 Ultra Low Input RNA kit (Clontech). An average of 150 pg of amplified cDNA was used for library preparation following Nextera XT DNA kit (Illumina).
Experiment attributes:
GEO Accession: GSM5026459
Links:
Runs: 1 run, 18.3M spots, 2.8G bases, 1Gb
Run# of Spots# of BasesSizePublished
SRR1348566018,347,5822.8G1Gb2024-01-18

ID:
12951115

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