U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX9862478: GSM5023899: P12707_137; Sus scrofa; RNA-Seq
2 ILLUMINA (Illumina NovaSeq 6000) runs: 21.6M spots, 2.2G bases, 649Mb downloads

Submitted by: NCBI (GEO)
Study: RNA-seq data from submiligram porcine myocardial tissue before and after myocardial infarction
show Abstracthide Abstract
We have developed an endovascular micro-endomyocardial biopsy device (Micro-EMB) with an outer diameter of 0.4 mm in order to minimize procedural risk, sampling trauma, and increase sampling specificity compared to conventional EMB. Here, we have taken micro-EMB samples from swine myocardium before, during and after myocardial infarction to detect potential gene expression responses. Overall design: Twentythree blood samples and 62 micro-biopsy samples from the left ventricular myocardial wall were taken from three individual swine. Of the micro-biopsy samples, 6 were taken at baseline, 9 during the one hour occlusion (0 -1 h), 22 at 1 - 3 hours, 21 after two days and 21 after 14 days. The biopsies were either aimed at the apical region of the heart, which was considered affected by the infarction, or lateral regions of the heart which were considered non-affected by the infarction.
Sample: P12707_137
SAMN17359067 • SRS8042322 • All experiments • All runs
Organism: Sus scrofa
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNAdvance Tissue kit with modifications: Reduce reagent volumes by dividing with 13. Use vortexing + centrifugation to homogenize samples. SMARTer Pico
Experiment attributes:
GEO Accession: GSM5023899
Links:
Runs: 2 runs, 21.6M spots, 2.2G bases, 649Mb
Run# of Spots# of BasesSizePublished
SRR1344934310,945,5891.1G328.3Mb2021-04-14
SRR1344934410,620,7461.1G320.7Mb2021-04-14

ID:
12909654

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...