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SRX9751580: GSM4994515: P54d7_Naive_4; Homo sapiens; RNA-Seq
6 ILLUMINA (NextSeq 500) runs: 38M spots, 4G bases, 1.2Gb downloads

Submitted by: NCBI (GEO)
Study: Transcriptome differences in FCRL5 positive and negative Influenza-specific memory B cells
show Abstracthide Abstract
We examined the transcriptional differences between circulating B cell subsets post-vaccination. Using FCRL5 as a marker of Tbet expressing B cells, we sorted FCRL5+ (Tbet+) and FCRL5- (Tbet-) memory B cells, naïve B cells, and antibody secreting plasmablasts at day 7 and day 14 post-vaccination. Additionally, we used H1 B cell tetramers to track cells responding to the influenza vaccine. These data provide insights into the transcriptional programming of distinct B cell subsets that respond to influenza vaccination. Overall design: RNA-seq on 4 B cell subsets from patients 7 or 14 days post influenza vaccination.
Sample: P54d7_Naive_4
SAMN17178108 • SRS7941595 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Cells were FACS sorted from PBMCs according to the indicated sort markers into RLT+1%Bme using the indicated markers. Total RNA was purified using the Quick-RNA MicroPrep Kit (Zymo Research) All purified RNA was used as input for the SMART-seq v4 cDNA synthesis kit (Takara). Final libraries were constructed using 400 pg of cDNA as input for the NexteraXT kit with the NexteraXT indexing primers (Illumina).
Experiment attributes:
GEO Accession: GSM4994515
Links:
Runs: 6 runs, 38M spots, 4G bases, 1.2Gb
Run# of Spots# of BasesSizePublished
SRR1332418817,405,4061.8G516.3Mb2023-03-01
SRR1332418917,278,0931.8G515.1Mb2023-03-01
SRR13324190839,213125.9M42.5Mb2023-03-01
SRR13324191819,186122.9M41.3Mb2023-03-01
SRR13324192824,733123.7M41.5Mb2023-03-01
SRR13324193816,368122.5M41.1Mb2023-03-01

ID:
12752598

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