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SRX9682656: GSM4973282: USA500 NRS385 Planktonic 5 hour; Staphylococcus aureus; RNA-Seq
4 ILLUMINA (NextSeq 500) runs: 9.3M spots, 1.4G bases, 509Mb downloads

Submitted by: NCBI (GEO)
Study: Temporal transcriptomic analysis of five Staphylococcus aureus strains' biofilms and planktonic counterparts
show Abstracthide Abstract
Differential expression of five S. aureus biofilms versus their planktonic counterparts at 5 h, 10 h, and 24 h. Overall design: S. aureus biofilms were formed in TSB using 96-well plates for five S. aureus strains: N315 (USA100), MRSA252 (USA200), LAC (USA300), MW2 (USA400), NRS385 (USA500). Biofilm samples and their planktonic counterparts were collected in biological triplicate at 5 h, 10 h, and 24 h. Each sample was generated by pooling three independent biological replicate RNA preps.
Sample: USA500 NRS385 Planktonic 5 hour
SAMN17077256 • SRS7880500 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total bacterial RNA was isolated utilizing an RNeasy Kit (Qiagen) and contaminating DNA was removed by treatment with TURBO DNA-free kit (Ambion). Samples with a RIN of >9.7 measured by Agilent 2100 Bioanalyzer system and corresponding RNA 6000 Nano kit (Agilent) were used in this study. Ribosomal RNA was removed using a Ribo-Zero Kit for Gram-positive Bacteria (Illumina) and MICROBExpress Bacterial mRNA enrichment kit (Agilent). Library construction was performed using the TruSeq Stranded mRNA Kit from Illumina omitting mRNA enrichment steps.
Experiment attributes:
GEO Accession: GSM4973282
Links:
Runs: 4 runs, 9.3M spots, 1.4G bases, 509Mb
Run# of Spots# of BasesSizePublished
SRR132512562,360,561356.5M130.4Mb2020-12-23
SRR132512572,315,412349.7M126.1Mb2020-12-23
SRR132512582,297,615347M126.3Mb2020-12-23
SRR132512592,276,746343.8M126.1Mb2020-12-23

ID:
12665759

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