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SRX9509172: GSM4908644: Non-myelinating Corneal Schwann Cells scRNA-seq; Oryctolagus cuniculus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 887,489 spots, 79M bases, 53.3Mb downloads

Submitted by: NCBI (GEO)
Study: Corneal Nonmyelinating Schwann Cells Illuminated by Single Cell Transcriptomics and Visualized by Protein Biomarkers
show Abstracthide Abstract
The cornea is the most innervated tissue in the human body. Myelinated axons upon inserting into the peripheral corneal stroma lose their myelin sheaths and continue into the central cornea wrapped by only nonmyelinating corneal SCs (nm-cSCs). This anatomical organization is believed to be important for central vision. Here we employed single-cell RNA sequencing (scRNA-seq), microscopy, and transgenics to characterize these nm-cSCs of the central cornea. Using principal component analysis, uniform manifold approximation and projection, and unsupervised hierarchal cell clustering of scRNA-seq data derived from central corneal cells of male rabbits, we successfully identified several clusters representing different corneal cell types, including a unique cell cluster representing nm-cSCs. To confirm protein expression of cSC genes, we performed cross-species validation, employing corneal whole mount immunostaining with confocal microscopy in mouse corneas. We expect that our results will advance the future study of nm-cSCs in applications of nerve repair, and provide a resource for the study of corneal sensory function. Overall design: Examination of non-myelinating Coreneal Schwann Cells through single cell RNA sequencing
Sample: Non-myelinating Corneal Schwann Cells scRNA-seq
SAMN16796259 • SRS7717686 • All experiments • All runs
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Corneal buttons from central aspect of the tissue from young adult male rabbits (after mechanical removal of endothelial cell layer and trypsin digeston for partial removal of epithelium) were dissociated into single cell suspension, filtered, centrifuged , and resuspended in ice-cold 1X PBS with 0.05% BSA and immediately processed for scRNA-seq analysis. scRNA libraries were prepared for sequencing using Chromium system (10x Genomics; (Zheng et al., 2017)) for droplet-based single cell library generation with v3 Chromium chemistry and processed for cDNA library construction and subsequent scRNA-seq analysis (Rheaume et al., 2018)
Experiment attributes:
GEO Accession: GSM4908644
Links:
Runs: 1 run, 887,489 spots, 79M bases, 53.3Mb
Run# of Spots# of BasesSizePublished
SRR13061069887,48979M53.3Mb2020-11-16

ID:
12427183

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