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SRX9434507: GSM4880530: ovary sh_w rep3; Drosophila melanogaster; RNA-Seq
2 ILLUMINA (Illumina HiSeq 4000) runs: 34.1M spots, 1.7G bases, 572.3Mb downloads

Submitted by: NCBI (GEO)
Study: Dimerisation of the PICTS complex via LC8/Cut-up drives co-transcriptional transposon silencing in Drosophila [RNA-Seq]
show Abstracthide Abstract
In animal gonads, the PIWI-interacting RNA (piRNA) pathway guards genome integrity in part through the co-transcriptional gene silencing of transposon insertions. In Drosophila ovaries, piRNA-loaded Piwi detects nascent transposon transcripts and instructs heterochromatin formation through the Panoramix-induced co-transcriptional silencing (PICTS) complex, containing Panoramix, Nxf2 and Nxt1. Here, we report that the highly conserved dynein light chain LC8/Cut-up (Ctp) is an essential component of the PICTS complex. Loss of Ctp results in transposon de-repression and a reduction in repressive chromatin marks specifically at transposon loci. In turn, Ctp can enforce transcriptional silencing when artificially recruited to RNA and DNA reporters. We show that Ctp drives dimerisation of the PICTS complex through its interaction with conserved motifs within Panoramix. Artificial dimerisation of Panoramix bypasses the necessity for its interaction with Ctp, demonstrating that conscription of a protein from a ubiquitous cellular machinery has fulfilled a fundamental requirement for a transposon silencing complex. Overall design: RNA sequencing from Drosophila melanogaster ovarian somatic cells (OSCs) treated with either Ctp or control (GFP) knockdowns, and from Drosophila melanogaster ovaries with either Ctp, Panx or control (white) germline knockdowns. Four replicates per condition.
Sample: ovary sh_w rep3
SAMN16666794 • SRS7648840 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: OSC pellets were lysed in Trizol. Ovaries were homogenized in Trizol. RNA was isolated using phenol/chloroform extraction. NEBNext Poly(A) mRNA magnetic Isolation Module (NEB), followed by NEBNext Ultra Directional RNA Library Prep kit for Illumina (NEB)
Experiment attributes:
GEO Accession: GSM4880530
Links:
Runs: 2 runs, 34.1M spots, 1.7G bases, 572.3Mb
Run# of Spots# of BasesSizePublished
SRR1298291517,105,167855.3M287.8Mb2021-01-25
SRR1298291616,989,423849.5M284.5Mb2021-01-25

ID:
12331068

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