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SRX9434468: GSM4880473: OSC H3K4me2 si-ctp rep2; Drosophila melanogaster; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 33.9M spots, 1.7G bases, 559.7Mb downloads

Submitted by: NCBI (GEO)
Study: Dimerisation of the PICTS complex via LC8/Cut-up drives co-transcriptional transposon silencing in Drosophila [ChIP-Seq]
show Abstracthide Abstract
In animal gonads, the PIWI-interacting RNA (piRNA) pathway guards genome integrity in part through the co-transcriptional gene silencing of transposon insertions. In Drosophila ovaries, piRNA-loaded Piwi detects nascent transposon transcripts and instructs heterochromatin formation through the Panoramix-induced co-transcriptional silencing (PICTS) complex, containing Panoramix, Nxf2 and Nxt1. Here, we report that the highly conserved dynein light chain LC8/Cut-up (Ctp) is an essential component of the PICTS complex. Loss of Ctp results in transposon de-repression and a reduction in repressive chromatin marks specifically at transposon loci. In turn, Ctp can enforce transcriptional silencing when artificially recruited to RNA and DNA reporters. We show that Ctp drives dimerisation of the PICTS complex through its interaction with conserved motifs within Panoramix. Artificial dimerisation of Panoramix bypasses the necessity for its interaction with Ctp, demonstrating that conscription of a protein from a ubiquitous cellular machinery has fulfilled a fundamental requirement for a transposon silencing complex. Overall design: ChIP-seq for H3K4me2 and H3K9me3 from Drosophila melanogaster ovarian somatic cells (OSCs) and Schneider 2 (S2) cells. OSCs were treated with either Ctp or control (GFP) knockdown. S2 cells harbouring a stable integration of the DNA sensor plasmid were transfected with either Lacl-Egg, Lacl-Panx or Lacl-Renilla (Control). Two replicates per condition.
Sample: OSC H3K4me2 si-ctp rep2
SAMN16666707 • SRS7648802 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 4000
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Samples were crosslinked in formaldehyde and lysed, followed by sonication. NEBNext® Ultra™ II DNA Library Prep Kit for Illumina® (NEB)
Experiment attributes:
GEO Accession: GSM4880473
Links:
Runs: 1 run, 33.9M spots, 1.7G bases, 559.7Mb
Run# of Spots# of BasesSizePublished
SRR1298286633,854,4981.7G559.7Mb2021-01-25

ID:
12331029

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