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SRX9366705: GSM4861855: Tibpika-1; Ochotona curzoniae; RNA-Seq
1 ILLUMINA (HiSeq X Ten) run: 21.5M spots, 6.5G bases, 2.1Gb downloads

Submitted by: NCBI (GEO)
Study: ChIP-seq data from pika Epas1 knock in MAF and RNA-seq data from mouse, rat, rabbit and Tibetan pika fibroblasts
show Abstracthide Abstract
MAF from pika Epas1-3FLAG knock-in mice were extracted and immortalized. After 12h DMOG treatment, cells were conducted for the ChIP-seq (Bmal1,Flag). We found that in knock-in mice fibroblasts, EPAS1-3FLAG can bind to similar E-box locus compared with BMAL1. Fibroblasts from mouse, rat, rabbit and Tibetan pika were extracted (and Tibetan pika fibroblasts were immortalized). RNA was extracted at 90% confluency. We found that Per2 mRNA level was significantly lower in Tibetan pika fibroblasts compared with other species. Overall design: To evaluate the binding site of Epas1 and the mRNA level of core clock genes in different species
Sample: Tibpika-1
SAMN16560376 • SRS7602089 • All experiments • All runs
Library:
Instrument: HiSeq X Ten
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: After growing to 90% confluency, cells were lysed with TRIZOL directly and total RNA was extracted with chloroform and isopropanol. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM4861855
Links:
Runs: 1 run, 21.5M spots, 6.5G bases, 2.1Gb
Run# of Spots# of BasesSizePublished
SRR1290179521,504,6526.5G2.1Gb2023-09-29

ID:
12231293

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