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SRX9260457: GSM4822866: p20084-s008_RHz12_BAL_Day4_GEX; Macaca mulatta; RNA-Seq
2 ILLUMINA (Illumina NovaSeq 6000) runs: 400.6M spots, 46.9G bases, 14.3Gb downloads

Submitted by: NCBI (GEO)
Study: Baricitinib treatment resolves lower airway inflammation and neutrophil recruitment in SARS-CoV-2-infected rhesus macaques [scRNA-Seq]
show Abstracthide Abstract
SARS-CoV-2 induced hypercytokinemia and inflammation are critically associated with COVID-19 disease severity. Baricitinib, a clinically approved JAK1/2 inhibitor, is currently being investigated in COVID-19 clinical trials. Here, we investigated the immunologic and virologic efficacy of baricitinib in a rhesus macaque model of SARS-CoV-2 infection. Viral shedding measured from nasal and throat swabs, bronchoalveolar lavages and tissues was not reduced with baricitinib. Type-I IFN antiviral responses and SARS-CoV-2-specific T-cell responses remained similar between the two groups. Importantly, animals treated with baricitinib showed reduced inflammation, decreased lung infiltration of neutrophils, reduced NETosis activity, and more limited lung pathology. Moreover, baricitinib treated animals had a rapid and remarkably potent suppression of lung macrophages production of cytokines and chemokines responsible for inflammation and neutrophil recruitment. These data support a beneficial role for, and elucidate the immunological mechanisms underlying, the use of baricitinib as a frontline treatment for severe inflammation induced by SARS-CoV-2 infection. Overall design: Five rhesus macaques (Macaca mulatta) were infected with SARS-CoV-2. Two RMs were administered 4 mg Baricitinib starting at day 2 post-infection (DPI) for 8-9 consecutive days. scRNA-Seq profiling of cells isolated from BAL (bronchoalveolar lavages) prior to SARS-CoV-2 inoculation (-5 DPI; Baseline); and 4 days after infection, and 48 hours after beginning baricitinib (4 DPI).
Sample: p20084-s008_RHz12_BAL_Day4_GEX
SAMN16392924 • SRS7490532 • All experiments • All runs
Organism: Macaca mulatta
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: single-cell suspensions of 100,000 BAL-derived cells, and approximately 30,000 cells were loaded onto 10X Chromium Controller in the BSL3. Single cells were partitioned into droplets (Gel Beads in Emulsion: GEMs) using Chromium NextGEM Single Cell 5' Library & Gel Bead kits on the 10X Chromium Controller(Zheng et al., 2017). The resulting cDNA was amplified and libraries were prepared for transcriptomic analysis according to manufacturer instructions. Gene expression libraries were sequenced as paired-end 26x91 reads on an Illumina NovaSeq6000 targeting a depth of 50,000 reads per cell
Experiment attributes:
GEO Accession: GSM4822866
Links:
Runs: 2 runs, 400.6M spots, 46.9G bases, 14.3Gb
Run# of Spots# of BasesSizePublished
SRR12791311198,034,64623.2G7.1Gb2020-11-10
SRR12791312202,553,13723.7G7.2Gb2020-11-10

ID:
12080020

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