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SRX8863955: GSM4705773: PVNS4; Homo sapiens; RNA-Seq
4 ILLUMINA (Illumina NovaSeq 6000) runs: 410.7M spots, 123.2G bases, 41.8Gb downloads

Submitted by: NCBI (GEO)
Study: Single cell analysis of PVNS synovium from human
show Abstracthide Abstract
Pseudotime analysis, cytotrace, velocity was used to determine the source of subpopulation. To compare the difference between PVNS and steady state synovium, we conduct collaborated analysis containing both PVNS and OA synovium. Qusage analysis reveal the difference of the subsets between them. We for the first time using single cell analysis delineating PVNS cell atlas and have deepen understanding toward PVNS Presumed function and source of certain subpopulation might be the future target that worth trying. We also locate major subpopulation that is responsible for its unremitting inflammation, angiogenesis and invasiveness. Overall design: Single cell analysis to uncover mechanism of PVNS synovium, with osteoarthritis synovium as control.
Sample: PVNS4
SAMN15693631 • SRS7125577 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Sequencing libraries were conducted using the BD Rhapsody Single-Cell Analysis System (BD Biosciences), following the manufacturer's protocol.
Experiment attributes:
GEO Accession: GSM4705773
Links:
Runs: 4 runs, 410.7M spots, 123.2G bases, 41.8Gb
Run# of Spots# of BasesSizePublished
SRR1236474284,960,52925.5G8.6Gb2023-09-14
SRR1236474392,669,41127.8G9.5Gb2023-09-14
SRR12364744135,015,20040.5G13.8Gb2023-09-14
SRR1236474598,082,59829.4G10Gb2023-09-14

ID:
11522702

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