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SRX8854715: GSM4704764: beforeFACS_Kin_PlusATc_Rep3; synthetic construct; OTHER
1 ILLUMINA (NextSeq 500) run: 2.7M spots, 398.6M bases, 130.3Mb downloads

Submitted by: NCBI (GEO)
Study: Dissecting the yeast heat shock response by CRISPRi/a
show Abstracthide Abstract
CRISPRi screens on the repression of 129 protein kinases and 161 transcription factors in S. cerevisiae. We quantify perturbation effects on cellular fitness at 23, 30 and 38°C, expression of the SSA1 Hsp70 chaperone (as proxy for heat shock response activity) and thermotolerance. The integration of these phenotypes allowed us to identify core signaling pathways of the HSR and their contributions to temperature-associated growth and heat resistance. Overall design: CRISPR interference screens in S. cerevisiae in bulk yeast populations on five selection conditions: competitive growth assays over 1.5-2 days at temperatures 23, 30 and 38°C, survival of a lethal heat shock (150 min at 50°C, including recovery without maintaining CRISPRi induction), and chaperone expression as a proxy for heat shock response activity (FACS-based collection of cells by their cellular Hsp70 GFP reporter intensity).
Sample: beforeFACS_Kin_PlusATc_Rep3
SAMN15680420 • SRS7116389 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: Before and after selection procedures, plasmid DNA was extracted using FastPrep and glass beads to destroy the yeast cell wall in combination with standard extraction methods. The gRNA barcodes amplified from the one-copy-per-cell CEN-plasmids. Illumina sequencing was performed in paired-end and 75-100 base pairs read length on NextSeq500 machines with 15% PhiX spike-in. DNA barcode libraries were generated by introducing standard Illumina P5 and P7 adapters and inline sample barcodes by PCR. Library preparation is otherwise performed according to standard Illumina protocols
Experiment attributes:
GEO Accession: GSM4704764
Links:
Runs: 1 run, 2.7M spots, 398.6M bases, 130.3Mb
Run# of Spots# of BasesSizePublished
SRR123553562,693,446398.6M130.3Mb2021-07-01

ID:
11512807

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