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SRX8699981: GSM4663946: Nematostella vectensis Sub-adult bodywall single cell RNA sequencing run 1; Nematostella vectensis; RNA-Seq
8 ILLUMINA (NextSeq 500) runs: 62.4M spots, 8.2G bases, 3.2Gb downloads

Submitted by: NCBI (GEO)
Study: Sea anemone single cell tissue profiling [scRNA-seq]
show Abstracthide Abstract
Sub-adult tissue pieces were processed into single cell RNA sequencing libraries in order to catalog spatial information and cell type distribution Overall design: Sub-adult Nematostella vectensis were dissected into four tissue pieces and dissociated into single cell suspensions that were loaded into a 10x Genomics Chromium Single Cell Controller
Sample: Nematostella vectensis Sub-adult bodywall single cell RNA sequencing run 1
SAMN15493430 • SRS6977819 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: 5-month old Nematostella vectensispolyps were dissected into 4 separate tissues: tentacles, mesenteries, pharynx, bodywall. Tissue pieces were treated with undiluted TrypLETM Select (Thermo Fisher, A1217701). For 1 hour the tissues were allowed to disintegrate in the enzyme with gentle agitation on a shaker, then dissociation into single-cell suspensions was completed with occasional pipetting over the course of another 1.5 hrs. Cell viability and counts were assayed with a Cellometer X2 (Nexcelom), and suspensions were diluted to 1000 – 1700 cells/uL and loaded into a 10x Genomics single cell platform using Vs.2 reagents. 10X Genomics Chromium v2 chemistry
Experiment attributes:
GEO Accession: GSM4663946
Links:
Runs: 8 runs, 62.4M spots, 8.2G bases, 3.2Gb
Run# of Spots# of BasesSizePublished
SRR121854567,847,7201G403.9Mb2022-10-06
SRR121854578,021,6501.1G415.4Mb2022-10-06
SRR121854587,890,8021G406.4Mb2022-10-06
SRR121854597,912,5011G410Mb2022-10-06
SRR121854607,755,7191G405.6Mb2022-10-06
SRR121854617,589,2861G397.6Mb2022-10-06
SRR121854627,828,1881G413.6Mb2022-10-06
SRR121854637,553,486997.1M393.3Mb2022-10-06

ID:
11321991

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