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SRX8685385: GSM4661598: mexR*-Stationary; Pseudomonas aeruginosa; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 9.2M spots, 1.4G bases, 629.6Mb downloads

Submitted by: NCBI (GEO)
Study: The impaired quorum sensing response of MexAB-OprM efflux pump overexpressing mutants is not due to non-physiological efflux of 3-oxo-C12-HSL
show Abstracthide Abstract
Multidrug (MDR) efflux pumps are ancient and conserved molecular machineries with relevant roles in different aspects of the bacterial physiology, besides antibiotic resistance. In the case of the environmental opportunistic pathogen Pseudomonas aeruginosa, it has been shown that overexpression of different efflux pumps is linked to the impairment of the quorum sensing (QS) response. Nevertheless, the causes of such impairment are different for each analyzed efflux pump. Herein, we performed an in-depth analysis of the QS-mediated response of a P. aeruginosa antibiotic resistant mutant that overexpresses MexAB-OprM. Although previous work claimed that this efflux pump extrudes the QS signal 3-oxo-C12-HSL, we show otherwise. Our results evidence that the observed attenuation in the QS response when overexpressing this pump is related to an impaired production of alkyl quinolone QS signals, likely prompted by the reduced availability of one of their precursors, the octanoate. Together with previous studies, this indicates that, although the consequences of overexpressing efflux pumps are similar (impaired QS response), the underlying mechanisms are different. This 'apparent redundancy' of MDR efflux systems can be understood as a P. aeruginosa strategy to keep the robustness of the QS regulatory network and modulate its output in response to different signals. Overall design: Differential gene expression in the Pseudomonas aeruginosa MexAB-OprM overexpressing mutant, mexR*, along the exponential and early stationary growth phase.
Sample: mexR*-Stationary
SAMN15471195 • SRS6964285 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was obtained as describedm in Schuster et al. (2003) using the RNeasy mini kit (QIAGEN). RNA samples were sequenced at the "Centro Nacional de Análisis Genómico" (CNAG), Barcelona (Spain). Ribosomal RNA was removed using "RiboZero rRNA Removal kit for Bacteria" (CNAG). To generate the libraries, 2 μg of RNA were treated with "TruSeq RNA sample preparation kit" (Illumina) combined with a specific strand labelling using dUTPs (Sultan, M., et al., 2012). The sequencing in 2 x 75 pair-end format with Illumina technology was performed.
Experiment attributes:
GEO Accession: GSM4661598
Links:
Runs: 1 run, 9.2M spots, 1.4G bases, 629.6Mb
Run# of Spots# of BasesSizePublished
SRR121705699,214,1811.4G629.6Mb2021-10-26

ID:
11301437

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