GSM4649373: DKO Fast #3; Rattus norvegicus; RNA-Seq - SRA

SRX8657102: GSM4649373: DKO Fast #3; Rattus norvegicus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 5.8M spots, 583.7M bases, 186.3Mb downloads

Submitted by: NCBI (GEO)

Study: Transcriptome profile of INS-1E Ctrl and DKO cells

PRJNA643780 • SRP269752 • All experiments • All runs

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To analyse gene expression differences between the TFEB/TFE3 KO cells vs. Controls, under growing conditions (GC) vs. Fasting conditions (Fast) Overall design: Total RNA was extracted from n=4 for each conditions

Sample: DKO Fast #3

SAMN15425263 • SRS6938375 • All experiments • All runs

Organism: Rattus norvegicus

Library:

Instrument: Illumina NovaSeq 6000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: RNA was quantified and mixed at 10ng/µl Total RNA (100 ng) from each sample was prepared using QuantSeq 3'mRNA-Seq Library prep kit (Lexogen, Vienna, Austria) according to manufacturer's instructions The amplified fragmented cDNA of 300 bp in size were sequenced in single-end mode using the Novaseq6000 (Illumina) with a read length of 100 bp

Experiment attributes:

GEO Accession: GSM4649373

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 5.8M spots, 583.7M bases, 186.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR12135905	5,779,074	583.7M	186.3Mb	2023-07-31

ID:: 11259191

SRA

Sequence Read Archive

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