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SRX8572530: GSM4625394: NCC2112_EV_Rep1; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 78.3M spots, 23.7G bases, 9.5Gb downloads

Submitted by: NCBI (GEO)
Study: Genome-wide chromatin profiles of PBRM1 [RNA-Seq]
show Abstracthide Abstract
PBRM1 is an accessory subunit of the PBAF subclass of the SWI/SNF chromatin remodeler. The inactivation of PBRM1 is the second most frequent mutational event in kidney tumorigenesis. Here we show that in VHL-deficient ccRCC tumors, PBRM1 loss results in an altered PBAF complex that retains the association between SMARCA4 and ARID2 but disengages BRD7 from SMARCA4. The PBRM1-deficient PBAF complexes redistribute from promoter proxy regions to distal enhancer regions. The ATPase function of SMARCA4 enhances the recruitment of nuclear factor RELA to aberrant sites and promotes NF-?B activity. Proteasome inhibitor bortezomib reverses NF-?B activation by reducing RELA binding at regions bound by PBRM1-deficient PBAF and delays PBRM1-deficient tumor growth. In conclusion, PBRM1 safeguards the chromatin by repressing aberrant liberation of pro-tumorigenic NF-?B target genes by residual PBRM1-deficient PBAF complexes. Overall design: Comparison of transcriptomic changes with and without PBRM1
Sample: NCC2112_EV_Rep1
SAMN15313754 • SRS6864587 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted using the Qiagen RNeasy Mini kit RNAseq libraries were prepared using Illumina Tru-Seq Stranded Total RNA kit protocol
Experiment attributes:
GEO Accession: GSM4625394
Links:
Runs: 1 run, 78.3M spots, 23.7G bases, 9.5Gb
Run# of Spots# of BasesSizePublished
SRR1204351278,324,62623.7G9.5Gb2021-06-14

ID:
11147275

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