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SRX8358030: GSM4558121: stage 19 rep 2; Oryzias latipes; ATAC-seq
1 ILLUMINA (HiSeq X Ten) run: 84.1M spots, 25.2G bases, 10Gb downloads

Submitted by: NCBI (GEO)
Study: Dynamic Transcriptional and Chromatin Accessibility Landscape of Medaka Embryogenesis
show Abstracthide Abstract
Chromatin accessibility of nine embryonic samples was profiled using transposase-accessible chromatin with high-throughput sequencing (ATAC-seq) to identify potential regulatory elements. Overall design: ATAC-seq libraries of 18 medaka embryonic stages.
Sample: stage 19 rep 2
SAMN14945170 • SRS6674129 • All experiments • All runs
Organism: Oryzias latipes
Library:
Instrument: HiSeq X Ten
Strategy: ATAC-seq
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: Medaka embryos were grown to the indicated times and chorions were removed by incubating in 1mg/mL Pronase.After removed yorks using deyork buffer,embryo tissues were triturated to homogeneity in 1 mL 1X TrypLE™ Express. ATAC-Seq libraries were prepared using Omni-ATAC protocol and DNA fragments were recovered using mini-ATAC protocol
Experiment attributes:
GEO Accession: GSM4558121
Links:
Runs: 1 run, 84.1M spots, 25.2G bases, 10Gb
Run# of Spots# of BasesSizePublished
SRR1180665284,144,51425.2G10Gb2020-06-16

ID:
10870995

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