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SRX8356096: GSM4557258: 19-L-958-13bp-KO-LT-3; Mus musculus; RNA-Seq
1 ILLUMINA (HiSeq X Ten) run: 15.4M spots, 4.6G bases, 1.8Gb downloads

Submitted by: NCBI (GEO)
Study: HMCES safeguards genome integrity and long-term self-renewal of hematopoietic stem cells during stress responses
show Abstracthide Abstract
Hematopoietic stress drives quiescent hematopoietic stem cells (HSCs) to proliferate, generating reactive oxygen species and oxidative DNA damage including abasic sites. The coupling between abasic site generation and DNA replication during HSC stress responses, however, presents a challenge to accurately repair these abasic sites in the single-stranded DNA (ssDNA) generated during replication, leading to strand breaks and mutations. Here, we show in mice that HMCES, an evolutionarily conserved sensor and shield of ssDNA abasic sites, plays a pivotal role in overcoming this challenge. Hmces-deficient HSCs exhibited compromised long-term self-renewal capacity and elevated DNA damage in vivo in response to various hematopoietic stress, as well as broad attenuation of DNA damage response and repair pathways. Loss of HMCES also rendered HSCs hypersensitive to alcohol-derived acetaldehyde and might associate with increased susceptibility of leukemia. Collectively, our findings highlighted HMCES as a novel protector of HSCs and shed light on its physiological roles in regeneration and tumorigenesis. Overall design: LT-HSCs of WT and Hmces knockout for duplicates are performed RNA sequencing.
Sample: 19-L-958-13bp-KO-LT-3
SAMN14943207 • SRS6672311 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: HiSeq X Ten
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA from 1500 FACS-sorted LT-HSCs was extracted using Quick-RNA Kits (ZYMO) and resuspended in nuclease-free water. cDNA synthesized and amplified from the total RNA was used the Smart-seq2 method as described previously (Picelli et al., 2014). Sequencing libraries were generated from 500pg cDNA using TruePrep DNA Library Prep Kit V2 for Illumina (Vazyme, TD503) according to the manufacturer's protocols. All the samples were sequenced on the Illumina HiSeq X Ten sequencers with 150 bp paired-end reads.
Experiment attributes:
GEO Accession: GSM4557258
Links:
Runs: 1 run, 15.4M spots, 4.6G bases, 1.8Gb
Run# of Spots# of BasesSizePublished
SRR1180465215,434,3104.6G1.8Gb2022-01-23

ID:
10869061

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