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SRX8340855: GSM4552014: RNAseq_C. beijerinckii: B. subtilis cocultured cathodic MEC-connected, nitrate-enriched wastewater, rep2; Clostridium beijerinckii; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 4M spots, 609.1M bases, 252.6Mb downloads

Submitted by: NCBI (GEO)
Study: Co-culturing Bacillus subtilis and wastewater microbial community in a bio-electrochemical system enhances denitrification and butyrate formation
show Abstracthide Abstract
Bio-augmentation could be a promising strategy to improve processes for treatment and resource recovery from wastewater. In this study, the Gram-positive bacterium Bacillus subtilis was co-cultured with the microbial communities present in wastewater samples with high concentrations of nitrate or ammonium. Glucose supplementation (1%) was used to boost biomass growth in all wastewater samples. In anaerobic conditions, the indigenous microbial community bio-augmented with B. subtilis was able to rapidly remove nitrate from wastewater. In these conditions, B. subtilis overexpressed nitrogen assimilatory and respiratory genes including NasD, NasE, NarG, NarH, and NarI, which arguably accounted for the observed boost in denitrification. Next, we attempted to use the the ammonium- and nitrate-enriched wastewater samples bio-augmented with B. subtilis in the cathodic compartment of bioelectrochemical systems (BES) operated in anaerobic condition. B. subtilis only had low relative abundance in the microbial community, but bio-augmentation promoted the growth of Clostridium butyricum and C. beijerinckii, which became the dominant species. Both bio-augmentation with B. subtilis and electrical current from the cathode in the BES promoted butyrate production during fermentation of glucose. A concentration of 3.4 g/L butyrate was reached with a combination of cathodic current and bio-augmentation in ammonium-enriched wastewater. With nitrate-enriched wastewater, the BES effectively removed nitrate reaching 3.2 mg/L after 48 h. In addition, 3.9 g/L butyrate was produced. We propose that bio-augmentation of wastewater with B. subtilis in combination with bioelectrochemical processes could both boost denitrification in nitrate-containing wastewater and enable commercial production of butyrate from carbohydrate- containing wastewater, e.g. dairy industry discharges. These results suggest that B. subtilis bio-augmentation in our BES promotes simultaneous wastewater treatment and butyrate production. Overall design: Examination of 8 different samples in MEC cells and each sample was sequenced four times to ensure sufficient sequencing depth.
Sample: RNAseq_C. beijerinckii: B. subtilis cocultured cathodic MEC-connected, nitrate-enriched wastewater, rep2
SAMN14923761 • SRS6664007 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA extraction was performed through RNeasy Mini Kit (Qiagen), and the quality examination was performed by Bioanalyzer (Agilent) through Agilent RNA 6000 Nano Kit. After removing rRNA from total RNA samples through Ribo-Zero rRNA Removal Kit (Bacteria) (Illumina), library was prepared through TruSeq mRNA stranded Bacteria HT (Illumina).
Experiment attributes:
GEO Accession: GSM4552014
Links:
Runs: 1 run, 4M spots, 609.1M bases, 252.6Mb
Run# of Spots# of BasesSizePublished
SRR117887124,038,628609.1M252.6Mb2020-05-15

ID:
10848964

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