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SRX8243371: GSM4512234: WT_3D7_T_rep1_RNA-seq; Plasmodium falciparum; RNA-Seq
1 ILLUMINA (HiSeq X Ten) run: 24.6M spots, 7.4G bases, 2.8Gb downloads

Submitted by: NCBI (GEO)
Study: A transcriptional repressor programs gametocytogenesis in human malaria parasites (PfAP2-G5) [RNA-Seq]
show Abstracthide Abstract
Gametocytogenesis, the process by which malaria parasites produce sexual forms that can infect mosquitoes, is essential for the transmission of malaria. A transcriptional switch of the pfap2-g gene triggers sexual commitment, but how the complex multi-step process is precisely programed remains largely unknown. Here, by systematic functional screening of a panel of ApiAP2 transcription factors, we identify six new apiAP2 members associated with gametocytogenesis in Plasmodium falciparum. Among these, PfAP2-G5 (PF3D7_1139300) was found to be indispensable for gametocytogenesis. This factor suppresses the transcriptional activity of the pfap2-g gene via binding to both the upstream region and exonic gene body, the latter is linked to the maintenance of local heterochromatin structure, thereby preventing initiation of sexual commitment. Removal of this repressive effect through pfap2-g5 knockout disrupts the asexual replication cycle and promotes sexual commitment accompanied by upregulation of pfap2-g expression. However, the gametocytes produced fail to mature fully. Further analyses show that PfAP2-G5 is essential for gametocyte maturation, and causes the down-regulation of pfap2-g and a set of early gametocyte genes activated by PfAP2-G prior to gametocyte development. Collectively, our findings reveal a regulation cascade of gametocyte production in malaria parasites, and provide a new target for transmission blocking interventions. Overall design: We carried out strand-specific RNA-seq libraries followed by deep sequencing (RNA-seq) to explore the transcriptional profile of the pfap2-g5_trun, pfap2-g5_dDBD, pfap2-g5_dDBD::pfap2-g_ko and WT-3D7 lines (control). We carried out strand-specific RNA-seq libraries followed by deep sequencing (RNA-seq) to explore the transcriptional profile of the pfap2-g5_trun, pfap2-g4_trun and WT-NF54 (control) lines.
Sample: WT_3D7_T_rep1_RNA-seq
SAMN14823730 • SRS6592007 • All experiments • All runs
Library:
Instrument: HiSeq X Ten
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was isolated from parasites with a combination of TRIzol (Invitrogen) treatment and using a Direct-zol RNA Kit (Zymo Research) as manufacturer's instructions. Library preparation for strand-specific RNA-seq was carried out by poly(A) selection with the KAPA mRNA Capture Beads (KAPA), and fragmented to about 300–400 nucleotides (nt) in length, then all subsequent steps were performed according to a KAPA Stranded mRNA-Seq Kit Illumina platform (KK8421).
Experiment attributes:
GEO Accession: GSM4512234
Links:
Runs: 1 run, 24.6M spots, 7.4G bases, 2.8Gb
Run# of Spots# of BasesSizePublished
SRR1168253624,634,0747.4G2.8Gb2021-08-06

ID:
10744994

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