GSM1572729: nrpe1-11_MethylC-Seq; Arabidopsis thaliana; Bisulfite-Seq - SRA

SRX823948: GSM1572729: nrpe1-11_MethylC-Seq; Arabidopsis thaliana; Bisulfite-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 24.4M spots, 4.4G bases, 2.5Gb downloads

Submitted by: Gene Expression Omnibus (GEO)

Study: MethlyC-Seq of nrpd1-3, nrpd1-12, and nrpe1-11

PRJNA271134 • SRP051532 • All experiments • All runs

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Using MethylC-Seq to provide single-base resolution of DNA methylation status in nrpd1-3, nrpd1-12, and nrpe1-11 mutants Overall design: MethylC-Seq: 3 mutants examined, nrpd1-3, nrpd1-12, and nrpe1-11

Sample: nrpe1-11_MethylC-Seq

SAMN03273101 • SRS803587 • All experiments • All runs

Organism: Arabidopsis thaliana

Library:

Instrument: Illumina HiSeq 2000

Strategy: Bisulfite-Seq

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Genomic DNA was extracted from 14-d-old seedlings and sent to BGI (Shenzhen, China) for bisulfite treatment, library preparation, and sequencing. Bisulfite sequencing libraries were prepared using standard Illumina protocols.

Experiment attributes:

GEO Accession: GSM1572729

Links:

External link: GEO Sample GSM1572729

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 24.4M spots, 4.4G bases, 2.5Gb

Run	# of Spots	# of Bases	Size	Published
SRR1734715	24,406,455	4.4G	2.5Gb	2015-02-05

ID:: 1173650

SRA

Sequence Read Archive

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