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SRX8147133: GSM4487280: Resp18 mutant 3; Rattus norvegicus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 19.3M spots, 5.8G bases, 1.7Gb downloads

Submitted by: NCBI (GEO)
Study: Transcriptomic analysis of Resp18mutant rat kidneys reveals up-regulation of Renin-Angiotensin system
show Abstracthide Abstract
Regulated endocrine specific protein 18 (Resp18), expression has been specifically located in a series of tissues and cell types however the exact cellular function is unknown. In previous studies we have showed that a targeted disruption of Resp18 in Dahl SS rats (Resp18mutant) resulted in higher blood pressure (BP), increased renal fibrosis, and decreased survival rate on a long term (6-week) 2% high salt (HS) diet treatment compared with wild type SS rats. In the current study we studied whether a short term (1 week) exposure to HS diet shows a similar effect in Resp18mutant rats. Furthermore, previously we have shown that in addition to BP phenotype Resp18mutant rats have demonstrated deteriorative kidney phenotype evident through renal fibrosis, protein urea and protein cast formation. Based on this background we conducted BP study and performed transcriptomic profiling of the kidney after one-week exposure to HS diet treatment. Through radio-telemetry procedure, we found that the systolic BP was increased in the Resp18mutant rats compared with SS rats even with short term HS diet exposure. Therefore, we sought out to investigate if there was any alteration in the transcriptomic response by HS diet treatment in the Resp18mutant rat kidneys. Using RNA sequencing approach, we found that Resp18mutant rats showed a differential expression of 25 genes of which one was an upregulation of Ren. We confirmed the upregulation of Ren and other differentially expressed genes via qRT-PCR analysis. Upon KEGG pathway enrichment we found that the Resp18mutant rat showed upregulation in the renin angiotensin system (RAAS), and renin secretion pathway. Furthermore, the renin activity is found to be higher in Resp18mutant rats serum compared with SS rats. Therefore, these observations demonstrate that upon disruption of Resp18 gene in SS rats associated with the increase in renin secretion and thus increase BP. Overall design: RNA sequencing of Kidneys from control and Resp18 mutant rat RNA samples in triplicate, using Illumina.
Sample: Resp18 mutant 3
SAMN14651579 • SRS6509734 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: At the age of 6 weeks, both control and Resp18mutant rats diet was switched to det containing 2% high salt diet. Rats were euthanized after one week exposure to 2% high salt diet and kidneys were removed, flash frozen on liquid nitrogen, and total RNA was isolated using PureLink RNA Mini Kit. NEBNext® Ultra™ RNA Library Prep Kit for Illumina® (NEB, USA) following manufacturer's recommendations was used with 3 ug of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using Illumina protocols
Experiment attributes:
GEO Accession: GSM4487280
Links:
Runs: 1 run, 19.3M spots, 5.8G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
SRR1157938119,321,8585.8G1.7Gb2021-07-01

ID:
10624366

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