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SRX8127324: GSM4481360: 5h MH2A (1); Homo sapiens; ChIP-Seq
1 ABI_SOLID (AB 5500 Genetic Analyzer) run: 49.5M spots, 3.7G bases, 3.1Gb downloads

Submitted by: NCBI (GEO)
Study: The g-tubulin meshwork assists to the transport of cytosolic PCNA to chromatin in mammalian cells
show Abstracthide Abstract
Changes in the location of g-tubulin ensure cell survival and preserve genome integrity. We investigated whether the nuclear accumulation of g-tubulin facilitates the transport of proliferating cell nuclear antigen (PCNA) between the cytosolic and the nuclear compartment in mammalian cells. We found that the g-tubulin meshwork assists to the recruitment of PCNA to chromatin. Also, decreased levels of g-tubulin reduce the nuclear pool of PCNA. In addition, the g-tubulin C terminus encodes a PCNA-interacting peptide (PIP) motif, and a g-tubulin–PIP-mutant affects the nuclear accumulation of PCNA. In a cell-free system, PCNA and g-tubulin formed a complex. In tumors, there is a significant positive correlation between TUBG1 and PCNA expression. Thus, we report a novel mechanism that constitutes the basis for tumor growth by which the g-tubulin meshwork maintains indefinite proliferation by acting as an opportune scaffold for the transport of PCNA from the cytosol to the chromatin. Overall design: The experiment was preformed in one cell line and a total number of 22 samples were included.There are two samples for each antibody (gamma tubulin, macrohistone2A and PCNA). For gamma tubulin rhere is 2 samples for G0/G1, 0h, 3h, 5h, 7h, 9h and for MH2A and PCNA the timepoints are 3h and 5h and as control, there are 2 whole cell lysate (Input) samples included.
Sample: 5h MH2A (1)
SAMN14608481 • SRS6491641 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: AB 5500 Genetic Analyzer
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Nuclei were lysed and sonicated. Nuclei were cleared and gamma-tubulin-DNA-complexes or PCNA-DNA-complexes were isolated with antibody. Libraries were prepared according to AB libray builder system instructions accompanying the DNA Sample Kit.
Experiment attributes:
GEO Accession: GSM4481360
Links:
Runs: 1 run, 49.5M spots, 3.7G bases, 3.1Gb
Run# of Spots# of BasesSizePublished
SRR1155761249,482,0663.7G3.1Gb2021-04-17

ID:
10577319

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