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SRX8075706: GSM4456725: WG17019_C02-W09; Macaca mulatta; RNA-Seq
3 ILLUMINA (Illumina HiSeq 2500) runs: 352,250 spots, 16.2M bases, 12.9Mb downloads

Submitted by: NCBI (GEO)
Study: Genetic and transcriptomic identification of sensory neuron types underlying chronic pain in primates
show Abstracthide Abstract
Molecular characterization of the individual neuron types existing in the primate dorsal root ganglion and the relation to model organisms used for studying somatosensation and pain is critical for understanding the cellular origin of chronic pain and for translational aspects of biomedical research. However, molecular insights into the primate dorsal root ganglion are missing and a systematic comparison of strategies for somatosensation between the mouse and primates is lacking. Here we classify non-human primate sensory neurons based on their transcriptome and identify neuronal types with heritability to chronic pain. We identify nine neuronal types and use machine learning to expose an overall cross-species conserved strategy and shared taxonomy for nociception, although with differences at individual gene level, highlighting the importance of incorporating primate knowledge for the successful translation of discoveries in rodent model organisms. Genomic loci implicated in chronic pain were mapped onto specific primate sensory neuron types to identify the cellular origin of chronic pain. The common-variant genome-wide association results for chronic pain point to the same cells at the same pain sites and concentrate on two different neuronal types between pain disorders, suggesting that causative cell types and molecular mechanisms are different between different pain conditions. Overall design: 6-8 Lumbar DRGs, 3 pairs of the biggest and one pair of anterior/posterior (L3-L7) extracted from two female Rhesus monkeys
Sample: WG17019_C02-W09
SAMN14550296 • SRS6443841 • All experiments • All runs
Organism: Macaca mulatta
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Extracted DRGs were cut once longitudinally (along the nerve) followed by chopping into ~0.5 mm slices. Samples were enzymatically treated for 1 h at 37°C with triturating every 15 min. The resulting cell suspension was then run through 100 µm cell-strainers. 1 ml of 10% Optiprep was loaded under the cell suspension solution using a gel loading tip and centrifugated at 200g for 6 min with a low break. Supernatant was discarded, the cell pellet resuspended and run through a 10 µm strainer. The strainer was rinsed twice and cells were then collected by flushing the filter twice. The cells were kept on ice for 15-20 min, centrifuged for 3 min at 100 g and resuspended in 900 µl of filtered NMDG-SC/B27/12% optiprep and dispensed immediately into a WaferGen9600 Chip. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM4456725
Links:
Runs: 3 runs, 352,250 spots, 16.2M bases, 12.9Mb
Run# of Spots# of BasesSizePublished
SRR11501731109,1725M4Mb2021-03-12
SRR11501732123,3335.7M4.5Mb2021-03-12
SRR11501733119,7455.5M4.4Mb2021-03-12

ID:
10518158

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