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SRX8012053: GSM4436589: IPEC-J2 4 hour #1; Campylobacter jejuni; RNA-Seq
1 ILLUMINA (Illumina MiSeq) run: 1.1M spots, 172M bases, 67.2Mb downloads

Submitted by: NCBI (GEO)
Study: Development of an in vivo ligated loop model reveals new insight into the host immune response against Campylobacter jejuni
show Abstracthide Abstract
The symptoms of infectious diarrheal disease are mediated by the interplay between the host and pathogen. Campylobacter jejuni is the leading bacterial cause of diarrhea worldwide due to its near-ubiquitous zoonotic association with poultry. One of the outstanding questions is what factors drive the intestinal inflammation during the development of C. jejuni-mediated disease. Specifically, it is not known the extent to which the bacteria are responsible for the diarrheal symptoms via cell necrosis, or whether there is immune cell recruitment prior to tissue damage. To determine the stepwise process of inflammation that leads to diarrhea, we used a piglet ligated intestinal loop model to study the intestinal environment in response to C. jejuni. Pigs were chosen due to the anatomical similarity of the porcine intestine to the human intestine, as the basis of disease modeling is to understand the process of human disease. Using immunoassays and proteomic approaches, we found that neutrophils are most likely the predominant cell type recruited to the intestines of C. jejuni infected animals. In the lumen of the intestine, a number of neutrophil related proteins increased during C. jejuni infection, including proteins related to neutrophil migration (elastase and MMP9), actin reorganization and bacterial uptake (Cdc42, WAVE-2, and Arp2/3), and antimicrobial proteins (lipocalin-2, myeloperoxidase, S100A8, and S100A9). The appearance of neutrophils also corresponds with increases of both IL-8 and TNF-a. Compared to infection with the C. jejuni wild-type strain, infection with the noninvasive C. jejuni ?ciaD mutant resulted in a blunted inflammatory response, with less inflammatory cytokines and neutrophil markers. These findings indicate that intestinal inflammation is driven by C. jejuni virulence, and that resident intestinal cells precipitate the inflammatory response. Using this new disease model, we have developed a platform to study the early immune events during C. jejuni infection. Overall design: Minnesota mini pigs were used in a ligated intestinal loop model of infection, where the pigs were maintained under general anesthesia and 1 x 10^10 C. jejuni was inoculated into ~10 cm discreet ligated intestinal segments. The pigs were maintained for 3, 6, 12, or 30 hours, and luminal C. jejuni was recovered and sequenced. Three animals each were included in the analysis, with two technical replicates (loops) within each animal. These results were compared to co-culture with cultured IPEC-J2 cells for 2.5 or 4 hours (two samples at each time point). All samples were compared to the respective 'input' sample, which is C. jejuni grown in MH broth for 18 hours.
Sample: IPEC-J2 4 hour #1
SAMN14468234 • SRS6385638 • All experiments • All runs
Library:
Instrument: Illumina MiSeq
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Bacterial pellets were collected by centrifugation and snap frozen. RNA Extraction was done using the Ambion Ribopure Bacteria kit. rRNA was depleted with 3' biotinylated oligonucleotides that were designed to hybridize with C. jejuni 16S and 23S rRNAs. Illumina MiSeq libraries were prepared using the KAPA stranded RNAseq kit
Experiment attributes:
GEO Accession: GSM4436589
Links:
Runs: 1 run, 1.1M spots, 172M bases, 67.2Mb
Run# of Spots# of BasesSizePublished
SRR114338451,140,821172M67.2Mb2020-10-07

ID:
10448712

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