GSM4400343: MM_M1_2_sample 392; Callithrix jacchus; OTHER - SRA

SRX7880806: GSM4400343: MM_M1_2_sample 392; Callithrix jacchus; OTHER
1 ILLUMINA (Illumina NovaSeq 6000) run: 1.7M spots, 491M bases, 166.7Mb downloads

Submitted by: NCBI (GEO)

Study: Epigenetic landscape of Mammalian Brain M1 by Single Nucleus Methylation Sequencing [MM_M1_2]

PRJNA611602 • SRP252100 • All experiments • All runs

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Illustrating the cellular architecture of the mammalian brain is critical to understanding its diverse functions and complex animal behaviors. Single nucleus methylation sequencing was applied to M1 regions of human and mouse brains. we identified distinct cell clusters and formed them in a hierarchical taxonomy. These clusters include known primary brain cell types and possible sub-types. We use these data to identify the epigenomic characteristics and to define specific regulatory elements for each cell cluster. Overall design: Apply snmC-seq2 to brain M1 regions to identify epigenomic landcape of the adult human and marmoset brains

Sample: MM_M1_2_sample 392

SAMN14338454 • SRS6288137 • All experiments • All runs

Organism: Callithrix jacchus

Library:

Instrument: Illumina NovaSeq 6000

Strategy: OTHER

Source: GENOMIC

Selection: other

Layout: PAIRED

Construction protocol: M1 regions of human/marmoset brains were dissected. Library prepared following protocol discribed in Luo, Chongyuan, Angeline Rivkin, Jingtian Zhou, Justin P. Sandoval, Laurie Kurihara, Jacinta Lucero, Rosa Castanon, et al. 2018. “Robust Single-Cell DNA Methylome Profiling with snmC-seq2.” Nature Communications 9 (1): 3824.

Experiment attributes:

GEO Accession: GSM4400343

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 1.7M spots, 491M bases, 166.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR11273721	1,680,588	491M	166.7Mb	2021-10-07

ID:: 10310590

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