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SRX7880648: GSM4400305: MM_M1_2_sample 354; Callithrix jacchus; OTHER
1 ILLUMINA (Illumina NovaSeq 6000) run: 2M spots, 567M bases, 194.7Mb downloads

Submitted by: NCBI (GEO)
Study: Epigenetic landscape of Mammalian Brain M1 by Single Nucleus Methylation Sequencing [MM_M1_2]
show Abstracthide Abstract
Illustrating the cellular architecture of the mammalian brain is critical to understanding its diverse functions and complex animal behaviors. Single nucleus methylation sequencing was applied to M1 regions of human and mouse brains. we identified distinct cell clusters and formed them in a hierarchical taxonomy. These clusters include known primary brain cell types and possible sub-types. We use these data to identify the epigenomic characteristics and to define specific regulatory elements for each cell cluster. Overall design: Apply snmC-seq2 to brain M1 regions to identify epigenomic landcape of the adult human and marmoset brains
Sample: MM_M1_2_sample 354
SAMN14338394 • SRS6288100 • All experiments • All runs
Library:
Instrument: Illumina NovaSeq 6000
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: M1 regions of human/marmoset brains were dissected. Library prepared following protocol discribed in Luo, Chongyuan, Angeline Rivkin, Jingtian Zhou, Justin P. Sandoval, Laurie Kurihara, Jacinta Lucero, Rosa Castanon, et al. 2018. “Robust Single-Cell DNA Methylome Profiling with snmC-seq2.” Nature Communications 9 (1): 3824.
Experiment attributes:
GEO Accession: GSM4400305
Links:
Runs: 1 run, 2M spots, 567M bases, 194.7Mb
Run# of Spots# of BasesSizePublished
SRR112736831,955,074567M194.7Mb2021-10-07

ID:
10310432

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