GSM4368223: 33K44_2dpi_6-1; Fusarium verticillioides; RNA-Seq - SRA

SRX7827063: GSM4368223: 33K44_2dpi_6-1; Fusarium verticillioides; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 12.7M spots, 3.2G bases, 1Gb downloads

Submitted by: NCBI (GEO)

Study: Functional subnetwork modules and discovery of hub genes with signal peptide using RNA-Seq (hybrid 33k44 vs. inbred B73)

PRJNA609706 • SRP251263 • All experiments • All runs

show Abstracthide Abstract

We performed a systematic computational network-based analysis of large-scale F. verticillioides RNA-seq datasets to identify gene subnetwork modules associated with virulence and fumonisin regulation. Overall design: Investigation on two different strains (Maize inbred B73 kernels vs. maize hybrid 33k44 kernels)

Sample: 33K44_2dpi_6-1

SAMN14258363 • SRS6238199 • All experiments • All runs

Organism: Fusarium verticillioides

Library:

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: For each replicate, 10 inoculated kernels were pooled, and total RNA from kernels was extracted. Standard QA/QC procedure for RNA samples was implemented and library construction was performed at the Texas A&M AgriLife Research Genomics and Bioinformatics Service (College Station, TX).

Experiment attributes:

GEO Accession: GSM4368223

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 12.7M spots, 3.2G bases, 1Gb

Run	# of Spots	# of Bases	Size	Published
SRR11214572	12,741,815	3.2G	1Gb	2020-03-03

ID:: 10241102

SRA

Sequence Read Archive

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