GSM4279351: S-T1D_S114; Nematostella vectensis; RNA-Seq - SRA

SRX7619021: GSM4279351: S-T1D_S114; Nematostella vectensis; RNA-Seq
6 ILLUMINA (Illumina HiSeq 2500) runs: 4.3M spots, 432M bases, 150.1Mb downloads

Submitted by: NCBI (GEO)

Study: Gene expression during recovery from different forms of trauma in the sea anemone, Nematostella vectensis

PRJNA602703 • SRP243928 • All experiments • All runs

show Abstracthide Abstract

We exposed N. vectensis to three forms of trauma (streptomycin, cytochalasin D, or calcium-free seawater) to determine differences in gene expression during recovery from the trauma. Gene expression was monitored during different time points of recovery for animals exposed to cytochalasin D or calcium-free seawater. Gene expression was monitored following designated times of exposure and after 1 hour of recovery for animals exposed to streptomycin. Overall design: total 84 samples: 14 time points (3 replicates each) for 2 conditions. (14*3*2 = 84)

Sample: S-T1D_S114

SAMN13901800 • SRS6051396 • All experiments • All runs

Organism: Nematostella vectensis

Library:

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: RNA was extracted from oral discs and tentacles (flash frozen in liquid nitrogen/stored at -80) using Ambion RNAqueous extraction kit. Libraries were prepared as in Meyer et al. (2011)

Experiment attributes:

GEO Accession: GSM4279351

Links:

NCBI link: NCBI Entrez (gds)

Runs: 6 runs, 4.3M spots, 432M bases, 150.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR10952420	787,010	79.5M	27.2Mb	2020-01-23
SRR10952421	678,324	68.5M	23.2Mb	2020-01-23
SRR10952422	707,023	71.4M	25.9Mb	2020-01-23
SRR10952423	712,926	72M	25.5Mb	2020-01-23
SRR10952424	683,672	69.1M	24.7Mb	2020-01-23
SRR10952425	708,091	71.5M	23.7Mb	2020-01-23

ID:: 9944680

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity