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SRX741428: GSM1531481: unstressed_ntg_4; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 27.2M spots, 1.4G bases, 919.9Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: RNA-sequencing of unstressed and pressure-overloaded C57 mouse hearts with single or combined ablation of PKCdelta and PKCepsilon
show Abstracthide Abstract
Combinatorial ablation of the major cardiac-expressed novel protein kinase C isoforms, PKCdelta and PKCepsilon, in murine cadiac myocytes unmasked functionally redundant growth-limiting effects of these kinases in hemodynamically stressed adult hearts and during normal embryonic cardiac development, mediated in part by shared transcriptional de-repression of ERK and periostin signaling. Overall design: 14 cardiac polyA+-RNA profiles from unstressed, 12 week-old C57BL/6J-background mice (4 wild-type, 3 postnatal cardiac PKCdelta ablation, 3 germline PKCepsilon knockout, 4 combined knockouts) and 15 profiles generated 4 weeks after TAC induction (4 wild-type, 3 PKCdelta, 4 PKCepsilon, 4 combined knockout) were generated on Illumina HiSeq 2000 instruments.
Sample: unstressed_ntg_4
SAMN03142785 • SRS729122 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Hearts were removed and ventricular apexes were flash frozen on dry ice, and RNA was harvested using Trizol reagent. Polyadenylated RNA was isolated using oligo(dT) binding, followed by chemical fragmentation and preparation of non-strand-specific, single-end RNA-Seq libraries, as per the Supplement of Matkovich SJ, Hu Y, Eschenbacher WH, Dorn LE, Dorn GW, II. Direct and indirect involvement of microRNA-499 in clinical and experimental cardiomyopathy. Circ Res. 2012;111:521-31. non-strand-specific, single-end RNA-Seq
Experiment attributes:
GEO Accession: GSM1531481
Links:
External link:
Runs: 1 run, 27.2M spots, 1.4G bases, 919.9Mb
Run# of Spots# of BasesSizePublished
SRR162495127,173,5081.4G919.9Mb2015-04-22

ID:
1072305

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