GSM1525546: KSHV Transcriptome at 120hpi; Human gammaherpesvirus 8; R... - SRA

SRX732909: GSM1525546: KSHV Transcriptome at 120hpi; Human gammaherpesvirus 8; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 1.7M spots, 86.2M bases, 39.7Mb downloads

Submitted by: NCBI (GEO)

Study: Transcriptome Analysis of KSHV during de novo primary infection of human B cells (PBMCs)

PRJNA263878 • SRP048928 • All experiments • All runs

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The objective of this study was to identify the viral transcripts packaged into the virion particles and the transcription profiles of the viral genome during early infection, till the virus establishes latent infection in human PBMCs Overall design: Samples from each time points were analyzed and the experiments were done in duplicate.

Sample: KSHV Transcriptome at 120hpi

SAMN03108576 • SRS721696 • All experiments • All runs

Organism: Human gammaherpesvirus 8

Library:

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: Infected cells were cultured for indicated time followed by washing them with to remove virua attached to the cell surface. RNA was extracted by standard RNA extraction protocol The libraries were constructed using TrueSeq RNA sample preparation kit v2 from Illumina.

Experiment attributes:

GEO Accession: GSM1525546

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 1.7M spots, 86.2M bases, 39.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR1612541	1,689,635	86.2M	39.7Mb	2014-10-17

ID:: 1059768

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Sequence Read Archive

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