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SRX7293421: GSM4211302: 24hrMockA RNA-Seq; Arabidopsis thaliana; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 46.9M spots, 3.3G bases, 1.2Gb downloads

Submitted by: NCBI (GEO)
Study: LFY is pioneer transcription factor [RNA-seq]
show Abstracthide Abstract
This study identified LEAFY (LFY) as a pioneer transcription factor. We made use of 35S:LFY-GR, an inducible version of the LFY protein fused to the rat glucocorticoid hormone binding domain. In root explants, steroid activated LFY-GR triggers synchronous and abundant flower induction (PMID: 15225291). We combined LFY ChIP-seq, MNase-seq before and after LFY binding and time-course RNA-seq in 35S:LFY-GR root explants to characterize the role of LFY as a pioneer transcription factor. Overall design: Identification of 35S:LFY-GR induced genes using RNA-seq in the Ler ecotype of Arabidopsis thaliana. Root explants were treated with mock or dexamethasone solution for 1hr, 6hr or 24hr. Two biological replicates were sequenced per condition.
Sample: 24hrMockA RNA-Seq
SAMN13515893 • SRS5786721 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: total RNAs were extracted by trizol and chloroform and further purified by Qiagen RNA cleanup kit Manual library preparation with multiple steps -- steps described in detail in paper
Experiment attributes:
GEO Accession: GSM4211302
Links:
Runs: 1 run, 46.9M spots, 3.3G bases, 1.2Gb
Run# of Spots# of BasesSizePublished
SRR1061426046,858,3833.3G1.2Gb2020-10-27

ID:
9570233

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