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SRX6874266: GSM4086318: Tree_08_Tolf_T0; Citrus sinensis; RNA-Seq
3 ILLUMINA (Illumina HiSeq 2500) runs: 36.1M spots, 7.3G bases, 3.3Gb downloads

Submitted by: NCBI (GEO)
Study: RNA-seq analysis of citrus leaf samples of treated and untreated trees infected with Liberibacter asiaticus
show Abstracthide Abstract
We evaluated the effect on citrus trees of two newly-identified molecules, benzbromarone and tolfenamic acid, used as antimicrobials in commercial groves of sweet orange (Citrus sinensis). We delivered the molecules by trunk injection and evaluated safety and efficacy parameters by performing RNAseq of the citrus host responses. Overall design: Examination of two different molecules over L. asiaticus host transcriptome
Sample: Tree_08_Tolf_T0
SAMN12788766 • SRS5410173 • All experiments • All runs
Organism: Citrus sinensis
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Fifty leaves were collected randomly from the canopy of each tree. Following collection, the midrib and petiole of each leaf was excised and immediately submerged in RNAlater. Prior to RNA extraction, the tissue samples were freeze (-80°C), dried and homogenized. 25 mg of each powdered leaf was used. Total RNA was extracted with Isolate II RNA Plant Kit (Bioline, Taunton, MA). RNA integration number (RIN) was measured using BioAnalyzer (Agilent Technologies) RNA 6000 Nano Kit. TruSeq Stranded total RNA with Ribo-Zero Plan Kit (Illumina)
Experiment attributes:
GEO Accession: GSM4086318
Links:
Runs: 3 runs, 36.1M spots, 7.3G bases, 3.3Gb
Run# of Spots# of BasesSizePublished
SRR1014873010,966,1062.2G1,007.8Mb2019-09-20
SRR1014873111,940,3332.4G1.1Gb2019-09-20
SRR1014873213,220,4502.7G1.2Gb2019-09-20

ID:
9045857

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