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SRX6841340: GSM4077838: patient 1 DNT (CD3+TCRab+CD4-CD8-); Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 1.9M spots, 190.9M bases, 74.5Mb downloads

Submitted by: NCBI (GEO)
Study: A distinct CD38+CD45RA+ population of CD4+, CD8+ and double-negative T cells is controlled by FAS (I)
show Abstracthide Abstract
The identification and characterization of rare immune cell populations in humans can be facilitated by their growth advantage in the context of specific genetic diseases. Here, we use autoimmune-lymphoproliferative syndrome to identify a population of FAS-controlled TCRab+ T cells. They include CD4+, CD8+ and double-negative T cells and can be defined by a CD38+CD45RA+T-BET- expression pattern. These unconventional T cells are present in all healthy individuals, generated before birth, enriched in lymphoid tissue and do not expand during acute viral infection. They are characterized by a unique molecular signature that is unambiguously different from other known T-cell differentiation subsets and independent of CD4 or CD8 expression. Functionally, FAS-controlled T cells represent highly proliferative, non-cytotoxic T cells with IL-10 cytokine bias. Mechanistically, regulation of this physiologic population is mediated by FAS and CTLA4 signaling and its survival is enhanced by mTOR and STAT3 signals. Genetic alterations in these pathways result in expansion of FAS-controlled T cells, which can cause significant lymphoproliferative disease. Overall design: Defined T cell subsets were FACS sorted from 3 ALPS-FAS patients and from 3 control donors for reference, replicates were not included
Sample: patient 1 DNT (CD3+TCRab+CD4-CD8-)
SAMN12739491 • SRS5381003 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was isolated using the Qiagen RNAeasy microkit Barcoded RNA-sequencing libraries were prepared from 100 ng total RNA using the Ovation Human RNA-Seq system for small amounts of RNA (Nugen, San Carlos, CA). For selective depletion of rRNAs, the insert-dependent adapter cleavage method from Nugen was used prior to cDNA synthesis. To control sources of variability during sample and data processing, a common set of external spike-in RNA controls, developed by the external RNA controls consortium (ERCC), was used (Ambion).
Experiment attributes:
GEO Accession: GSM4077838
Links:
Runs: 1 run, 1.9M spots, 190.9M bases, 74.5Mb
Run# of Spots# of BasesSizePublished
SRR101094511,935,661190.9M74.5Mb2020-10-29

ID:
9004619

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