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SRX6780863: GSM4054653: iCell_ChIP-CREB_NT_KCl-0hr_B1_1; Homo sapiens; ChIP-Seq
1 ILLUMINA (NextSeq 500) run: 59.4M spots, 4.4G bases, 1.7Gb downloads

Submitted by: NCBI (GEO)
Study: Activity-dependent regulome and transcriptome of human GABAergic neurons reveal new patterns of gene regulation and neurological disease heritability
show Abstracthide Abstract
Neuronal activity-dependent gene expression is essential for healthy brain development. Emerging studies implicate alterations in GABAergic neuronal circuits in neurodevelopmental and psychiatric disorders. We conducted an activity-dependent transcriptional and epigenetic profiling of human iPSC-derived GABAergic neurons. Overall design: iCell GABAneurons were characterized by total and single-cell RNA sequencing and found to have similar transcriptional profiles to developing subcortical GABAergic neurons. These cultures were grown for 14-16 days in vitro prior to silencing with 2-amino-5-phosphonopentanoic acid and tetrodotoxin for 12 hours, followed by stimulation with 55mM potassium chloride for various time points prior to harvesting cells for RNA sequencing, ATAC sequencing or ChIP sequencing.
Sample: iCell_ChIP-CREB_NT_KCl-0hr_B1_1
SAMN12661504 • SRS5327551 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: nuclear isolation from homogenized cultures Nugen Ovation Ultralow Library System V1 using 2ng of starting DNA and performing 18 cycles of amplification
Experiment attributes:
GEO Accession: GSM4054653
Links:
Runs: 1 run, 59.4M spots, 4.4G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
SRR1004629259,361,9704.4G1.7Gb2020-11-27

ID:
8930538

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