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SRX6455752: GSM3946009: 3H_L3_CT; Danio rerio; Bisulfite-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 100,569 spots, 50.5M bases, 16.4Mb downloads

Submitted by: NCBI (GEO)
Study: Zebrafish sex differentiation under LPS-mediated inflamatory process.
show Abstracthide Abstract
Here the LPS effects on sex differentiation were studied. Dose-response, survival, gene expression methylation levels and sex ratios were recorded Overall design: zebrafish larva were treated with LPS for P. aeruginosa. Methylation Bisulfite sequencing was performed as described in Anastasiadi el al., 2018
Sample: 3H_L3_CT
SAMN12306468 • SRS5113429 • All experiments • All runs
Organism: Danio rerio
Library:
Instrument: Illumina HiSeq 2500
Strategy: Bisulfite-Seq
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: library preparation following protocol as in Anastasiadi et al 2018 Gonads were extracted, flash frozen in nitrogen liquid. DNA was extracted following the Phenol-Chlorofrom DNA extraction. Bisulfite conversion was carried out using D5020, Zymo Research from 1000 ng of genomic DNA in each sample. Illumina Miseq 2500 wasused for sequencing the library. Library was constructed following the Illumina's protocol: “16S metagenomic library preparation” using Nextera XT Index Kit V2 set A, FC-131–2001 kit.
Experiment attributes:
GEO Accession: GSM3946009
Links:
Runs: 1 run, 100,569 spots, 50.5M bases, 16.4Mb
Run# of Spots# of BasesSizePublished
SRR9697475100,56950.5M16.4Mb2021-07-01

ID:
8552270

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