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SRX6389156: GSM3916424: RNA whole body KN99alpha 30S rep 1; Cryptococcus neoformans; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 53.2M spots, 12.8G bases, 4.6Gb downloads

Submitted by: NCBI (GEO)
Study: Transcriptome of Cryptococcus neoformans and Cryptococcus deneoformans
show Abstracthide Abstract
The goal of this study was to position all transcripts extremities in two species of Cryptococcus using TSS-Seq and QuantSeq 3' mRNA-Seq when cells are grown under different conditions. We analysed also the level of expression of each genes in the same condition using the same cell sample. All these data have spiked in using a fixed quantity of S. cereviae cells added just before DNA and RNA extraction. Overall design: total RNA and DNA were extracted different Cryptococcus wild type and mutant strains and sequenced. TSS and PAS were positioned and gene expression was evaluated.
Sample: RNA whole body KN99alpha 30S rep 1
SAMN12187089 • SRS5048647 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Cells were grown on YPD at 30°C in stationary phase. The Cryptococcus cell preparation was spiked in with one tenth (OD/OD) of S. cerevisiae strain FY834 cells grown in YPD at 30°C in stationary phase. Total RNA was extracted with Trizol. For RNA-Seq, strand-specific, paired-end cDNA libraries were prepared from 10 μg of total RNA by polyA selection using the TruSeq Stranded mRNA kit (Illumina) according to manufacturer's instructions. cDNA fragments of ~400 bp were purified from each library and confirmed for quality by Bioanalyzer (Agilent). Then, 100 bases were sequenced from both ends using an Illumina HiSeq2500 instrument according to the manufacturer's instructions (Illumina).
Experiment attributes:
GEO Accession: GSM3916424
Links:
Runs: 1 run, 53.2M spots, 12.8G bases, 4.6Gb
Run# of Spots# of BasesSizePublished
SRR962708753,155,86212.8G4.6Gb2020-01-21

ID:
8462224

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